HCC patients and tissue specimens
The Clinical Research Ethics Committee of Sun Yat-sen University Cancer Center (Guangzhou, China) had approved this project, and we had got all the informed consents from the subjects. All data and material were obtained in accordance with the Declaration of Helsinki. In this study, tumor tissue samples from 218 HCC patients were used for immunohistochemical staining, and liver cancer tissues and adjacent non-liver cancer tissues from another 74 patients were collected for real-time qPCR. All patients underwent resection of hepatocellular carcinoma performed by the same surgeon between 2003 and 2008 at the Department of Hepatobiliary Oncology, Sun Yat-sen University Cancer Center (Guangzhou, China). There were 187 males and 31 females, with an average age of 48.7 years (range: 20–79 years). The median follow-up period was 54 months (range: 1–127 months).
Cell lines and reagents
All the cell lines and reagents were prepared as previously described[10]. HCC cell lines including MHCC97-H, MHCC97-L, SK-HEP-1, PLC/PRF/5, and Huh-7, and a normal liver cell line (Miha) were purchased from the Chinese Type Culture Collection (Shanghai, China), while Hep-G2 and Hep-3B cells were purchased from Guangzhou Cellcook Biotech Co., Ltd. (Guangzhou, China). Cells were cultured with Dulbecco’s modified Eagle’s medium (DMEM, Gibco, Carlsbad, CA, USA) supplemented with 100 μg/mL penicillin, 100 μg/mL streptomycin (Invitrogen, Carlsbad, CA, USA) and 10% fetal bovine serum (Gibco, USA) in a 37 °C incubator with 5% carbon dioxide and 85% humidity. Cells were cultured for three to six passages.
The sequences used for overexpression and shRNA-mediated knockdown of DRD3 were designed by GeneCopoeia (Rockville, MD, USA), and the pEZ-Lv105 human DRD3 overexpression vector, psi-LVRU6GP human DRD3 shRNA vector and pEZ-Lv105-GFP control vector were constructed by GeneCopoeia (Rockville, MD, USA). Base on the results of examining DRD3 expression in HCC cell lines, PLC/PRF/5 was chosen for constructing stable DRD3 knock-down cell lines while SK-HEP-1 was chosen for constructing stable DRD3 overexpression cell line. HCC cells needed to be 70% confluent before transfection was performed. Lenti-Pac™ HIV Expression Packaging Kits (GeneCopoeia, Atlanta, GA, USA) were used before transfection according to the manufacturer’s instructions. After stably transfecting the cell lines, all the cell lines had been treated with puromycin (2–4 μg/ml) for at least two weeks. Stable DRD3 knock-down cell lines (sh-DRD3-PLC/PRF/5–1, sh-DRD3-PLC/PRF/5–2), control cell line (sh-NC-PLC/PRF/5), a stable DRD3 overexpression cell line (ex-DRD3-SK-HEP-1) and control cell line (ex-vector-SK-HEP-1) were constructed and Western blotting was used to verify whether the cell lines were established successfully.
Dimethyl sulfoxide (DMSO, 20–139), U99194 (U116) and PD128907 (P216) were purchased from Sigma (St. Louis, MO, USA). SCH772984 (S7101) was purchased from Selleck (Houston, Texas, USA). The anti-DRD3 antibody (LS-B13859) was purchased from Lifespan Biosciences (Seattle, WA, USA). Primary antibodies specific for ERK (4695S), p-ERK (4370S), CREB (9197S), p-CREB (9198S), and β-tubulin (2146S) and an anti-rabbit antibody (7074S), which served as a secondary antibody, were purchased from Cell Signaling Technology (Danvers, MA, USA).
shinyGEO
shinyGEO (https://gdancik.shinyapps.io/shinyGEO/) is an online tool that can download gene expression data sets directly from The Gene Expression Omnibus (GEO) then analyze gene expression and perform survival analysis [18]. The cohort of GSE14520 [19] had been download and DRD3 expression was analyzed using GraphPad Software 6.
Kaplan–meier plotter analysis
Kaplan–Meier plotter (kmplot.com/analysis/) is an online tool providing easy access to information about the associations of mRNA expression with the survival of patients with liver cancer, breast cancer, ovarian cancer, lung cancer and gastric cancer [20]. Based on the median values of mRNA expression, patients were divided into the high and low expression groups, and survival analysis was performed by the K-M method to generate survival curves. K-M plotter can show many results, including the number at risk (cases), HR, 95% CI and p value. Differences were considered statistically significant when P < 0.05. In this study, we evaluated the relationships between DRD3 and overall survival (OS), recurrence-free survival (RFS), disease-specific survival (DSS), and progression-free survival (PFS).
cBioPortal
cBioPortal (www.cbioportal.org) is an online open access website resource for exploring, visualizing, and analyzing multidimensional cancer genomics data [21]. We used this online tool to analyze the associations between genetic mutations in DRD3 and OS, RFS, DSS and PFS. The survival curves are displayed on the webpage, and a difference was considered statistically significant when P < 0.05.
Real-time qPCR
RNA was extracted from HCC tissues and cell lines using TRIzol (Invitrogen, Carlsbad, CA) according to the instructions. cDNA was obtained by reverse transcription with a PrimeScript RT Kit (Takara, Dalian, China). Primer pairs specific for DRD3 (Invitrogen) were used, and GAPDH (Supplementary Table 1) served as the endogenous control. SYBR Green qPCR Super Mix and an ABI7900HT sequence detection system were used to run the thermal cycling program, and the presence of only one peak per reaction curve was considered to indicate a valid result.
Immunohistochemistry
Immunohistochemistry was performed as previously described [22]. Tissue samples from HCC patients were fixed with 100 mL/L formalin and were then embedded in paraffin for continuous sectioning. After the tissue slides were baked and dewaxed at 60 °C for 2 h, they were hydrated through an alcohol gradient and blocked with 30 mL/L H2O2 for 45 min. Antigen retrieval was conducted in citric acid buffer (pH 6.0) in a microwave at medium and high heat for 5 min each and medium heat for 15 min and were then incubated with the anti-DRD3 antibody (1:200) at 4 °C overnight. After repeated washes with PBS, the tissue slides were incubated with the secondary antibody in a 37 °C incubator for 30 min. A DAB reagent set (DAKO, Carpinteria, CA) was used to develop color, and nuclei were stained with hematoxylin. The results were assessed by two formally trained pathologists using a double-blind method with the German immune response score (IRS). Based on the staining intensity, DRD3 protein staining was scored as 0 = not stained, 1 = weakly stained, 2 = moderately stained, or 3 = strongly stained. In addition, the percentage of positive staining in tumor tissue was scored as 0 (< 10%), 1 (10%–25%), 2 (26%–50%), 3 (51%–75%) or 4 (> 75%). The two scores were multiplied and weighted for each case, and the cases were divided into four groups: absent staining (-), weak staining ( +), moderate staining (+ +), and strong staining (+ + +).
KEGG
KEGG (https://www.kegg.jp/) is an online tool including eighteen databases categorized into systems, genomic, chemical and health information [23]. The possible signal pathways which might be regulated by DRD3 were predicted by KEGG mapping tools, and the copyright permission of KEGG had been obtained.
Western blot analysis
Western blot analysis was performed as previously described [24]. Total protein of cells was extracted and separated by SDS–PAGE, then transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, MA, USA). Base on the molecular weights of the proteins which should be examined, the membranes had been cut before the incubation with primary antibodies. According to the expected molecular weight of the target protein, the membranes had been cut for suitable size to incubate with primary antibodies (included 35–45 kDa for DRD3, included 45–60 kDa for β-tubulin, included 35–45 kDa for ERK and p-ERK, included 35–45 kDa for CREB and p-CREB). All the primary antibodies had been made the specific detection and the results had been uploaded as supplementary file. After overnight incubating with primary antibodies at 4 °C, Membranes were incubated with anti-rabbit secondary antibodiesat room temperature for 1 h. BeyoECL Plus (Beyotime Biotechnology, Shanghai, China) was used for visualization and imaging. The images of original blots are provided in the Supplementary Materials.
Enzyme-linked immunosorbent assay (ELISA)
ELISA were performed by using ELISA Kits (Cat: LS-F10530, Lifespan Biosciences) which was used for examining the cAMP levels in cell lines and tumor tissues. All experimental steps were strictly carried out in accordance with the instructions.
Cell viability
Cell viability was examined with the Cell Counting Kit 8 (CCK8, Dojindo, Shanghai, China) according to the previously described [25]. Cell lines were seeded in 96-well plates at a density of 6 × 103 cells per well overnight and were then treated with PD128907, U99194, SCH772984 (1 µM) or 0.1% DMSO as the control for 24 h. CCK8 reagent was added to each well and incubated at 37 °C for 2 h. The absorbance of each well was detected at 450 nm (OD450). CCK8 assays of cells transfected with sh-NC-PLC/PRF/5, sh-DRD3-PLC/PRF/5, ex-vector-SK-HEP-1 and ex-DRD3-SK-HEP-1 were performed on Days 0, 1, 2, 3, 4 and 5. The remaining steps were exactly the same as those reported above.
Colony formation assay
Colony formation assays were performed as the previously described [10]. About 1000 cells were seeded in each well. The colonies were washed by PBS after 14 days incubation. 4% paraformaldehyde was used to fixed the colonies for 30 min. The colonies were stained with 0.1% crystal violet, then counted the number of colonies and filmed the images.
Wound healing assay
Wound healing assays were performed as the previously described [26]. Cells were planted into 12 well plates. Scratch the plates to make the wounds with a sterile pipette tip when the cells were up to 80%-90% confluence. After washing with PBS, DMEM without FBS was used to culture the cells, then the cell images were filmed.
Cell migration and invasion assays
Transwell assays were used to examine cell migration and invasion and performed as the previously described [27]. Migration and invasion assays were performed according to the manufacturer’s instructions. 1.0 × 104 cells were placed into top chamber of each insert (BD Biosciences) with PD128907 (100 nM), U99194 (1 nM), SCH772984 (1 µM) or 0.1% DMSO as the control. And the plates were incubated at 37 °C for 24 h. Sh-NC-PLC/PRF/5, sh-DRD3-PLC/PRF/5, ex-vector-SK-HEP-1 and ex-DRD3-SK-HEP-1 cells were examine using the same methods without drug treatment.
Xenograft tumor formation
The in vivo experiments were performed as the previously described [10]. All protocols for animal experiments were approved by the Clinical Research Ethics Committee of Sun Yat-sen University Cancer Center under Project License L102012016002Q and conformed to relevant aspects of the ARRIVE guidelines [28].
Eighteen mice were randomly divided into the control group, U99194 group and PD128907 group, with 6 mice in each group. Xenografts were established in each mouse by subcutaneous injection of 1 × 106 PLC/PRF/5 cells in 100 µl of PBS solution mixed with 100 µl of Matrigel. Approximately one week after inoculation, tumors were visible. Then, the mice were treated with PD128907 (0.1 mg/kg), U99194 (0.1 mg/kg), and 0.1% DMSO daily by intraperitoneal injection. Every 3rd day, tumor volumes were calculated with the formula a (length) × b2 (width)/2, and mice were weighed at the same time. After 30 days, the mice were sacrificed by isoflurane anesthesia followed by cervical dislocation, and the tumors were weighed post autopsy.
Eighteen mice were randomly divided into three groups. One group were injected with sh-NC-PLC/PRF/5 cells, while the other groups were injected with sh-DRD3-PLC/PRF/5 cells. One group with sh-DRD3-PLC/PRF/5 cells was treated with SCH772984 (2 mg/kg). Tumor volumes were calculated with the same formula. After 24 days, the mice were sacrificed by isoflurane anesthesia followed by cervical dislocation, and the tumors were prepared for other experiments.
Statistical analysis
Statistical analysis was performed as the previously described [29, 30]. All data are presented as means with the respective standard errors of the mean (SEMs) and were analyzed using GraphPad Software 6 for Windows (GraphPad, La Jolla, CA, USA) and Statistical Package for the Social Sciences (SPSS, version 22.0). The chi-square test was used to verify the relationships between DRD3 and clinicopathological features. Kaplan–Meier survival analysis with the log-rank test was used to evaluate the relationships between DRD3 and overall survival or recurrence-free survival. A Cox proportional hazards regression model was used to perform multivariate analysis for all prognostic factors that were found to be significant in univariate analysis. Student's t test was used to analyze and compare differences between the two groups of data. One-way ANOVA was used to analyze data with homogeneity of variance from multiple groups, and the Bonferroni method was then used for pairwise comparisons when a statistically significant difference was identified by ANOVA. P < 0.05 was considered statistically significant. At least three replicates were performed for each experiment at the cellular level.