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Circulating tumour cells escape from EpCAM-based detection due to epithelial-to-mesenchymal transition
© Gorges et al.; licensee BioMed Central Ltd. 2012
Received: 23 January 2012
Accepted: 11 April 2012
Published: 16 May 2012
Circulating tumour cells (CTCs) have shown prognostic relevance in metastatic breast, prostate, colon and pancreatic cancer. For further development of CTCs as a biomarker, we compared the performance of different protocols for CTC detection in murine breast cancer xenograft models (MDA-MB-231, MDA-MB-468 and KPL-4). Blood samples were taken from tumour bearing animals (20 to 200 mm2) and analysed for CTCs using 1. an epithelial marker based enrichment method (AdnaTest), 2. an antibody independent technique, targeting human gene transcripts (qualitative PCR), and 3. an antibody-independent approach, targeting human DNA-sequences (quantitative PCR). Further, gene expression changes associated with epithelial-to-mesenchymal transition (EMT) were determined with an EMT-specific PCR assay.
We used the commercially available Adna Test, RT-PCR on human housekeeping genes and a PCR on AluJ sequences to detect CTCs in xenografts models. Phenotypic changes in CTCs were tested with the commercially available “Human Epithelial to Mesenchymal Transition RT-Profiler PCR Array”.
Although the AdnaTest detects as few as 1 tumour cell in 1 ml of mouse blood spiking experiments, no CTCs were detectable with this approach in vivo despite visible metastasis formation. The presence of CTCs could, however, be demonstrated by PCR targeting human transcripts or DNA-sequences - without epithelial pre-enrichment. The failure of CTC detection by the AdnaTest resulted from downregulation of EpCAM, whereas mesenchymal markers like Twist and EGFR were upregulated on CTCs. Such a change in the expression profile during metastatic spread of tumour cells has already been reported and was linked to a biological program termed epithelial-mesenchymal transition (EMT).
The use of EpCAM-based enrichment techniques leads to the failure to detect CTC populations that have undergone EMT. Our findings may explain clinical results where low CTC numbers have been reported even in patients with late metastatic cancers. These results are a starting point for the identification of new markers for detection or capture of CTCs, including the mesenchymal-like subpopulations.
KeywordsCirculating tumour cells Breast cancer Xenograft Metastasis Epithelial-mesenchymal transition
Metastasis is a multistep process in the course of which tumour cells migrate into the circulation, generating circulating tumour cells (CTCs) in the blood stream or disseminated tumour cells (DTCs) that home to the bone marrow . It is thought that epithelial tumour cells have to undergo phenotypic changes to overcome the successive barriers to intravasation, survival in the blood, extravasation and secondary tumour formation . These changes are accompanied by a reduction of cell-cell adhesion, loss of apical-basolateral polarity, and loss of epithelial marker expression whereas the expression of mesenchymal-associated genes is induced . This developmental program, described as epithelial-to-mesenchymal transition (EMT), may be a prerequisite for invasive growth and metastatic spread . Although the role of EMT for CTCs is still under debate, recent findings support the hypothesis that CTC profile changes occur during tumour cell dissemination [5–7]. As EMT processes in human samples are hard to follow and because of the difficulty of detecting CTCs in humans , animal models could help to evaluate and dissect the functional implications of EMT specific processes in vivo.
CTCs could already be detected in blood samples of an orthotopic breast cancer model (MDA-MB-231) using a modified version of the FDA approved CellSearch technique . In xenograft models of prostate cancer, however, CTCs could only be detected after a second round of tumour cell inoculation after one in vivo passage . CTCs isolated from MDA-MB-231 breast cancer xenografts display a more aggressive phenotype than the original cells, indicating the impact of CTCs for metastatic formation . In addition, phenotypic changes on CTCs in animal models were also demonstrated , showing that CTCs are technically suitable for functional characterisation. We compared different breast cancer models (MDA-MB-231, MDA-MB-468 and KPL-4) in order to test their suitability to serve as model system for CTC formation. The fast emergence of mesenchymal-related CTC populations led to identification of new markers for CTC detection.
Human breast cancer cell lines MDA-MB-231 (ECACC, #92020424), MDA-MB-468 (ATCC, #HTB-132) and KPL-4 (Kawasaki Medical School) were cultured in DMEM/F12 + 200 mM glutamine (MDA-MB-231, MDA-MB-468) or RPMI + Glutamax (KPL-4) supplemented with 10% fetal calf serum (FCS) and 1% penicillin/streptomycin. Cells were maintained at 37°C in a humidified incubator with 5% CO2. Adherent cells were harvested at 80% confluency by washing with sterile Dulbecco’s phosphate buffered saline (PBS) followed by trypsinisation for 5 min at 37°C.
For the detection of EpCAM (epithelial cell adhesion molecule) and MUC-1 (mucin-1) expression, Western Blot analysis was performed. 20 μg of total cell protein were separated using SDS polyacrylamide gel electrophoresis (SDS-PAGE), and proteins were transferred to a nitrocellulose membrane. The membrane was blocked with PBS containing 0.1% Tween-20 (PBS-T) and 5% skimmed milk powder for 1 h at room temperature (RT). Following the blocking step, the EpCAM (abcam; [E144] (ab32392), 1 : 100) and MUC-1 (abcam; [EP1024Y] (ab45167), 1 : 1,000) primary antibodies were added and incubated over night at 4°C. The blot was washed three times with PBS-T. Next, horseradish peroxidase-conjugated secondary antibody was added to the blocking solution (GE Healthcare: NIF824, 1 : 5,000) and incubated for 2 h at RT. After three washing steps with PBS-T, detection was carried out using Amersham ECL Western Blotting Systems (RPN2232) and Imagequant software. Tubulin (Sigma: T6074, 1:2000) detection was included as loading control. The secondary antibody was purchased from GE Healthcare (NA93IVS).
5 x 105 cells were detached by trypsinisation, washed and stained for 30 min at RT in the dark. For the analysis of EpCAM expression tumour cells were stained with an APC-labeled (allophycocyanin) anti-EpCAM antibody (BD Bioscience, Cat. no. 347200; 1:200). FACS (fluorescence activated cell sorting) analysis was performed (FACScalibur) with addition of SYTOX® Red Dead Cell Stain (Invitrogen, Cat. No. S34859) to exclude dead cells. 10,000 cells were counted for the analysis.
The AdnaTest System is a method based on immunomagnetic enrichment of epithelial tumour cells using antibodies against EpCAM and MUC-1 followed by mRNA isolation via oligo(dT)-conjugated magnetic particles for the analysis of tumour associated gene expression by RT-PCR (EpCAM, MUC-1, Her2 (human epithelial growth factor receptor 2), and Actin). This assay was developed for the detection of CTCs in 5 ml of human blood. Since much smaller amounts of blood can be collected from murine models (800 to 1,000 μl, or ~1/5 of the recommended blood volume), we reduced the BreastSelect Beads (BreastCancerSelect, Article no. T-1-508) to 25 μl instead of 100 μl per sample. The rest of the protocol was carried out according to the manufacturer’s instructions. In the PCR reaction (run on a Veriti Thermal Cycler, Applied Biosystems), amplicons of the following sizes were generated: EpCAM: 395 base pairs (bp), MUC-1: 293 bp, Her2: 270 bp, and Actin: 114 bp. Visualisation of the PCR products was carried out with a 2100 Bioanalyser using DNA 1000 LabChips (Agilent Technologies), as recommended by AdnaGen.
Qualitative CTC detection - targeting human gene transcripts
100 μl blood samples were collected from mice in EDTA-tubes (S-Monovette, Sarstedt) and transferred to RNAprotect Animal Blood Tubes (Qiagen Cat. No. 76544) for immediate stabilisation of cellular RNA. Next, total RNA was purified using the RNeasy Protect Animal Blood Kit (Qiagen, Cat. No. 73224). cDNA synthesis was performed with 800 ng of RNA using the High Capacity RNA-to-cDNA Kit from Applied Biosystems (Cat. No. 4387406). For CTC detection, we designed human-specific primers targeting mRNA of the housekeeping genes glycerinaldehyd-3-phosphat-dehydrogenase (GAPDH) [Fwd 5`-ATCATCCCTGCCTCTACTGG-3`/Rev 5`-GTCAGGTCCACCACTGACAC-3`] and peptidylprolyl isomerase A (PPIA) [Fwd 5`-TTCATCTGCACTGCCAAGAC-3`/Rev 5`-TCGAGTTGTCCACAGTCAGC-3`] and the mesenchymal marker Vimentin [Fwd 5`-CGAAAACACCCTGCAATCTT-3`/Rev 5`-TCCAGCAGCTTCCTGTAGGT-3`]. PCR Master Mix was prepared by mixing 5 μl cDNA together with 12.5 μl HotStarTaq Master Mix Kit (Qiagen, Cat. No. 203443, 250 U). Primers were added to a final concentration of 0.5 μM and the samples were filled up with RNase-free water to a total volume of 25 μl. Additional amplifications with 2 μl of the BreastDetect primer mix from the AdnaTest (BreastDetect, Adna Article no. T-1-509) were performed to analyse EpCAM, MUC-1 and Her2 gene expression. PCR was performed under the following conditions: after 15 min denaturation at 95°C, 42 cycles were carried out by denaturation at 94°C for 40 s, annealing/extension at 60°C for 40 s and elongation for 30 to 60 s at 72°C. A final elongation step at 72°C for 10 min was followed by storage of the samples at 4°C. The PCR generates products of the following sizes: Vimentin: 618 bp, EpCAM, MUC-1 and Her2 (as mentioned before), GAPDH: 138 bp, and PPIA: 133 bp. Visualisation was done with a Agilent 2100 Bioanalyser and peaks with a concentration above 1 ng/μl were defined as positive (Agilent Assay properties: normal). The actin primers of the AdnaTest could not be evaluated in this setting since they are not human-specific.
Quantitative CTC detection - targeting human DNA (alu-sequences)
200 μl of murine blood were collected and red blood cells were lysed using RBC lysis solution from Qiagen for 10 min at 4°C (Cat. No. 158904). Next, samples were centrifuged for 10 min (450 g), followed by two washing steps using 1 ml of sterile PBS. DNA isolation was performed using DNeasy Mini Kits (Qiagen, Cat. No. 51306). 5 μl of the eluate were taken for qRT-PCR targeting human Alu-sequences [For 5`- CACCTGTAATCCCAGCACTTT-3`/Rev 5`-CCCAGGCTGGAGTGCAGT-3`] . Primers were added to a final concentration of 0.5 μM and the samples were filled up with RNase free water to a total volume of 25 μl. PCR (Real-Time PCR System 7500, Applied Biosystems) using the QuantiTec SYBR Green PCR Kit (Qiagen, Cat. No. 204143) was done as follows: after 15 min denaturation at 95°C, 40 cycles were carried out by denaturation at 94°C for 60 s, annealing/extension at 60°C for 30 s and elongation for 30 at 72°C. Amplification curves were analysed and the number of CTCs were calculated by spiking experiments which were included in every run. DNA from murine blood and water were included as negative controls.
Spiking experiments were done to test the sensitivity of the different methods. Fresh EDTA-blood was collected from female athymic NCr nude mice (nu/nu; Taconic). Cultured cells were harvested by trypsinisation and spiked into 1 ml of murine blood for the AdnaTest or 100 to 200 μl for detection of CTCs without antibody pre-enrichment. 1 to 50 cells were collected by pipetting under microscopic control, whereas higher numbers (1,000 and 100,000 cells) were prepared by dilution series. As negative controls, 20 murine blood samples were tested for each approach.
5 to 6 week old female NCr nude mice were used throughout all xenograft studies. All experiments were approved by the local regulatory agency Landesamt für Gesundheit und Soziales Berlin (approval number: 1403). Mice were housed according to institutional guidelines with highest animal welfare standards . For in vivo inoculation, harvested cells were counted with a CASY DT Cell Counter and Analyser (Innovatis AG). Cell number and viability were determined using the Analyser Software. Cells were kept at 4°C and resuspended in cold PBS or mixed with Matrigel (1 : 1) (BD Biosciences). 1 x 105 to 2 x 106 viable cells (MDA-MB-231, -468, and KPL-4) were injected orthotopically into mammary fat pads (m.f.p.) of the mice in a volume of 50 μl. Subsequently, mice were monitored for tumour growth.
Alternatively, for testing the stability of marker expression in CTCs, 1 x 105 to 5 x 105 cells of the KPL-4 and MDA-MB-231 line were injected into the tail vein or into the heart of female nude mice in a volume of 150 μl PBS.
Blood collection and autopsy
We obtained EDTA-blood from either the jugular vein, the inferior vena cava or by cardiac puncture as tumours reached sizes between 20 to 200 mm2. Tumours, lymph nodes, lungs and livers were taken out and immediately frozen in liquid nitrogen for the detection of metastases by PCR of human transcripts.
RNA isolation and mRNA amplification from tumours and tissues
Tissue was homogenised using Lysing Matrix D (MP Biomedicals, Cat. No. 116913500) and Fast Prep-24 System (MP Biomedicals, Cat. No. 116003500). RNA was purified using the RNeasy Mini Kit from Qiagen (Cat. no. 74104) and cDNA synthesis was performed with 400 ng of RNA input using the High Capacity RNA-to-cDNA Kit. PCR Master Mix was prepared as followed: 4 μl cDNA, 12.5 μl HotStarTaq Master Mix Kit and 2 μl of the primers from the AdnaTest kit or 0.5 μM in case of GAPDH, PPIA and vimentin. Each sample was filled up to 25 μl with RNase free water. Again, actin was excluded from analysis as signals were obtained in lysed tissues of tumour-free mice (data not shown). The Thermocycler was used for the PCR. Conditions were chosen as follows: 15 min denaturation at 95°C, 40 cycles of PCR were carried out by denaturation at 94°C for 40 s, annealing at 60°C for 40 s and elongation for 60 s at 72°C. Subsequently, termination of the reaction was carried out at 72°C for 10 min followed by storage of the samples at 4°C. 20 tumour-free (naive) mice were analysed as negative controls. Visualisation was done with an Agilent 2100 Bioanalyser and peaks with a concentration above 1 ng/μl were defined as positive (Assay properties set to “normal”).
Gene expression analysis of CTCs
EMT-like changes on CTCs during tumour growth were analysed in orthotopic models using the “Human Epithelial to Mesenchymal Transition RT-Profiler PCR Array” System (SABiosciences, Cat. No: PAHS-090 C). This array profiles the expression of 84 genes that have been associated with EMT. 500 μl of blood were collected and transferred to RNAprotect Animal Blood Tubes. Total RNA was purified using the RNeasy Protect Animal Blood Kit and cDNA synthesis was performed using the RT2 First Strand Kit (SABiosciences, Cat. No. C-03/330401). A pre-amplification step was included using the PreAMP cDNA Synthesis Primer Mix (SABiosciences Cat. No. PBH-9090). Next, sample cocktails were loaded onto the array and amplification was performed as recommended by the vendor. Two murine blood samples were included as negative controls to test the species specificity of the assay. Although the array is intended to be human specific, only 14 genes could be included for data analysis in our study since mRNA signals for the remaining 70 genes were detected in blood samples from control mice. Genes with a cycle threshold (Ct) value below 36 in the control setting were excluded from expression analysis. As positive control, 10 cells of the KPL-4 cell line with epithelial phenotype were spiked into 500 μl of native blood. ΔCt values were calculated by subtracting the Ct value of the target gene from the Ct value of the house-keeping gene (GAPDH). ΔCt values of blood samples taken from tumour-bearing animals (KPL-4, n = 5) were subtracted from ΔCt values of the epithelial control (ΔΔCt). Negative ΔΔCt (relative quantification) values represent upregulated genes whereas positive values indicate downregulation of the markers.
Detection of CTCs using the AdnaTest
CTC detection without pre-enrichment
We hypothesised that phenotypic changes associated with the epithelial-to-mesenchymal transition (EMT) and downregulation of the epithelial surface marker EpCAM could be responsible for our failure to detect CTCs using the AdnaTest. Therefore, we established two EpCAM-independent methods for CTC detection. The methods were based either on mRNA amplification of human gene transcripts (GAPDH, PPIA, EpCAM, MUC-1, Her2 and Vimentin) or amplification of human DNA (Alu-sequences).
Quantitative detection of CTCs in tumour bearing animals
Phenotypic changes of CTCs after intravenous and intracardiac injection
Tumour cells showed dynamic changes and down-regulated EpCAM and Her2 while circulating through the bloodstream (Figure 6a). Interestingly, cells adhering in the lungs kept EpCAM and Her2 mRNA expression (Figure 6b). To confirm these findings, we injected 500,000 cells of the MDA-MB-231 line into the heart of female mice. 45 min - 5 h after injection, blood was taken by cardiac puncture. Again, down-regulation of epithelial EpCAM and MUC-1 was observed, whereas transcripts of the mesenchymal marker vimentin and the house-keeping genes were detected in 100% of the blood samples (Figure 6c).
We confirm here previous reports that the AdnaTest is a very sensitive assay for detection of epithelial cells. We also demonstrate that the sensitivity of the assay was significantly dependent on the expression levels of EpCAM, which was causally linked to its failure to detect any positive CTC sample in murine breast cancer xenograft models. We were able to show that EMT occurs in vivo during formation of metastases in tumour-bearing mice. These changes include the down-regulation of EpCAM. We showed for the first time that gene expression changes in CTCs are very fast and seem to depend on contact with endothelial surfaces or organ systems in vivo, since even i.v. injected tumour cells quickly down-regulated EpCAM. The surprisingly fast loss of EpCAM could be explained by cleavage and shedding of the extracellular domain as described [15, 16]. Besides the down-regulation of EpCAM, we identified up-regulation of mesenchymal markers like COL5A2, EGFR, MSN, PDGFRB and Twist in CTCs, supporting the epithelial-to-mesenchymal transition as the cause for down-regulation of EpCAM. Confirming our findings, COL52A has been identified as marker for EMT, since TGFβ/TNFα-treatment induced a mesenchymal cell phenotype accompanied with increased expression of this gene . EGF signaling has also been previously linked to tumour progression and metastasis [18–21]. We found dramatically increased EGFR expression in CTCs, confirming the role of this pathway in the process of metastatic spread. It has been shown that EGF can induce EMT-like effects including upregulation of Twist through the EGFR pathway . Twist expression has been described as a crucial regulator of EMT and metastasis formation . CTCs also showed elevated Twist expression levels in our model, confirming these findings . The modified gene expression profile that we report here could provide the basis for alternative methods for isolation and detection of CTCs from clinical samples. The surface marker EGFR may be useful for capturing mesenchymal-like CTC subpopulations, whereas the intracellular proteins like vimentin, collagen-alpha-2 and Twist could be used for improved detection of CTCs by immunostaining. Such approaches will be especially useful to confirm the identity of CTC populations isolated by size exclusion as recently described . The isolation of CTCs based on their size is independent of epithelial marker expression and therefore leads to higher CTC yields. A larger set of tumor-specific markers will be useful in confirming the identity of CTC populations enriched by filtration methods.
In contrast to this study, CTC detection has previously been described using an EpCAM-based method in a murine xenograft model . In addition, CTC-positive samples were found in murine prostate cancer xenografts using a CTC-chip , which has been previously described and evaluated . Either EpCAM expression was not downregulated in the PC3 model or the CTC chip captures even cells with very little residual EpCAM expression. This hypothesis is supported by the fact that low EpCAM cells are captured late on the CTC-chip whereas cells with high EpCAM expression are bound already in the beginning of the flowpath (pers. communication S. Nagrath). Down-regulation of MUC-1 and Her2 on CTCs has also been noted by this group, in keeping with our findings. More recently, increased vimentin expression, indicative of EMT processes in CTCs in another orthotopic breast cancer model, has been published . Taken together, these results demonstrate that phenotypic changes occur in CTCs. For this reason, we believe that new methods are needed to ensure that the complete phenotypic variability of CTC populations can be described.
Although the prognostic value of CTC counts have been demonstrated using epithelial marker based CTC detection methods [27–30], our findings indicate that numerous cells may be lost in many blood samples of cancer patients due to EMT processes. This may explain why even in late stage metastatic patients, only around 50% of the patients with breast or prostate cancer have more than 5 CTCs and in case of colorectal cancer only 26% more than 3 CTCs in 7.5 ml blood. Other authors failed to detect subtypes of CTCs resembling normal type breast cancer using the CellSearch technique . Further, significantly higher numbers of CTCs could be detected using an EpCAM independent detection method compared to EpCAM based enrichment technology (69.2% vs. 42.3%) in breast cancer patients , suggesting that a mixture of EpCAM positive and EpCAM negative tumour cells circulate in the blood. In a study of neuroendocrine cancer patients using CellSearch, CTCs were found in only 21-43% of the patients, although 100% of the tumours showed strong membrane EpCAM expression by IHC . Down-regulation of EpCAM has been reported independently for DTCs in bone marrow and CTCs in peripheral blood of patients with breast cancer and for other solid tumors [34, 35]. These publications demonstrate that the use of anti-EpCAM antibody-based enrichment strategies limits the clinical utility the CellSearch System, the AdnaTest or other EpCAM based procedures. Our own data and several recent studies support the hypothesis that EMT-like shifts on CTCs occur during metastatic spread [5–7, 36]. These results indicate that CTCs will be lost using immuno-affinity enrichment that relies only on the level of EpCAM expression on the cell surface .
Taken together, our findings explain low CTC numbers in clinical studies even in metastatic cancer. The use of EpCAM-based enrichment techniques leads to the selective loss of CTC populations undergoing epithelial-to-mesenchymal transition. We could show that new technologies have to be developed which securely isolate all CTCs. Methods for the analysis of CTCs in clinical samples should be designed to detect both epithelial and mesenchymal-like subpopulations. Our findings could be used as a starting point for the qualification of new markers for CTC detection or capture including the mesenchymal-like subpopulations. Future studies should consider the heterogeneity of CTC populations and find out which one is prognostic for the course of the disease and which population may give best hints towards therapeutic options.
As we have shown in this work, the use of single surface markers for isolation of CTCs can lead to the loss of CTC populations having undergone phenotypic changes like the epithelial to mesenchymal transition. This finding may explain the clinical results with low CTC counts or even absence of detectable CTCs in many even late metastatic cancer patients. Future research has to identify new selection markers that are robustly expressed and not subject to phenotypic changes. An alternative is the enrichment of CTCs based on size and a detailed molecular analysis of the enriched cell population especially in respect to predictive markers like target expression and/or specific mutations.
We thank Tanja Rose, Daniela Foerster and Elke Schmid for expert technical assistance, Dr. David Henderson, Dr. Christoph Schatz and Dr. Marcus Conrad for many stimulating discussions and the Kawasaki Medical School for providing the KPL-4 breast cancer cell line.
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