NOTCH1 mutations influence survival in chronic lymphocytic leukemia patients

Chronic lymphocytic leukemia (CLL) is a heterogeneous disease with variable clinical course characterized by a monoclonal progressive accumulation of mature CD5+ B-lymphocytes avoiding apoptosis. Some patients with an indolent disease need no or little treatment while others have a more adverse disease at diagnosis. No common genetic lesion, which causes the disease, has been found [1], but recurrent mutations in CLL involve TP53 and ATM, and novel mutations in the NOTCH1, SF3B1, MYD88, BIRC3 and FBXW7 genes have been identified through next generation sequencing [2]. The CLL cases may be divided in two major groups regarding to mutated (M) or unmutated (UM) immunoglobulin heavy chain variable region gene (IGHV) where patients with an unmutated IGHV clone have a more adverse prognosis than patients with mutated IGHV gene [3, 4]. By the means of FISH analysis, different chromosomal aberrations as deletion in 11q, 13q, 17p or trisomy 12 are found in about 80% of tumor cells in the CLL-patients [5].

Recently, NOTCH1 mutations were found to be predictor of poor prognosis in CLL [6–11]. Furthermore a study of Rosati et al. [12] showed that NOTCH1 and NOTCH2, together with their ligands Jagged1 –and 2 are constitutively activated in B-CLL cells but not in normal B cells, suggesting that NOTCH signaling is involved in survival and resistance to apoptosis in CLL.

The NOTCH receptor is a membrane bound protein that consists of an extracellular, transmembrane and intracellular domain that can be released upon ligand interaction and transactivate target genes. The NOTCH signal pathway is activated by a ligand on a neighboring cell and plays an essential role in controlling proliferation, differentiation and survival. Following the receptor-ligand binding, the NOTCH receptor first undergoes a S2 proteolytic cleavage by ADAM proteinase in the extracellular domain, which then is followed by a S3 cleavage by a γ-secretase complex in the transmembrane domain releasing the intracellular NOTCH domain that translocates to the nucleus where it interacts with a transcription complex and acts as a transcriptional activator for multiple target genes [13]. The C-terminal part of the intracellular domain consists of a PEST region that is important for proteasomal degradation of the NOTCH receptor by binding to FBXW7, an E3 ubiquitin ligase, to limit duration of the NOTCH activity. A CT deletion in the C-terminal region results in removal of the PEST domain, a truncated NOTCH protein, and impaired NOTCH degradation and constitutive transcriptional activation of NOTCH target genes in CLL [7, 14].

In the present study we have screened for mutations in different parts of both the NOTCH1 and NOTCH2 gene in a cohort of 209 CLL-patients. There is a high structural similarity between NOTCH1 and NOTCH2 genes and recent NOTCH2 gain-of-function mutations are found in B-cell lymphomas [15]. Further, as NOTCH2 is involved in overexpression of CD23, one of the hallmarks of CLL [16], it prompted us to screen both the NOTCH1 and NOTCH2 genes for genetic alterations. Mutations were only found in the PEST region in the NOTCH1 gene in our cohort and emerged as an independent factor of poor overall survival and disease stage, in addition to TP53 mutations and IGHV gene status.

NOTCH1 heterozygous mutations in the PEST domain occurred in a frequency of 14 out of 209 patients (6.7%) in our study. Thirteen of the mutations correspond to a 2-bp frameshift deletion, c.7541_7542delCT and one is a novel GT deletion at c.6988_6989delGT, both generating frameshift mutations, with subsequent stopcodon and truncated proteins eliminating the PEST domain. The Kaplan-Meier curve for the CLL-patients with NOTCH1 mutations revealed a shorter overall survival (OS) compared to NOTCH1 wildtype patients (p = 0.049) (Figure 1). Clinical and biological characteristics of the CLL patients in relation to the NOTCH1 status are summarized in Table 2. Our study showed a similarity to other CLL studies, which have reported NOTCH1 PEST domain mutations in 4.7% - 12.2% [6–11].

T cell acute lymphoblastic leukemia (T-ALL) display high frequency of activating NOTCH1 mutations including the extracellular heterodimerisation domain, in addition to elimination C-terminal PEST region mutations [21]. Studies in head and neck cancer have also identified mutations in the extracellular epiderminal growth factor repeat domain in the NOTCH1 gene [22]. These studies prompted us to screen for mutations in those parts of the NOTCH1 gene, but no mutations could be detected. NOTCH2 has a role in marginal zone B cell fate decision, similar to the critical role for NOTCH1 in determing the T-cell fate [13]. NOTCH2 mutations are found in the C-terminal part close to the PEST region in splenic marginal zone lymphoma [23, 24], but we did not find any mutations in the PEST region or heterodimerisation domain of the NOTCH2 gene in our cohort.

Mutations in the TP53 gene are associated with poor prognosis in CLL [25]. Mutations in the NOTCH1 gene are almost mutually exclusive with mutations in the TP53 gene with or without 17p or 11q deletions, only one sample harbored mutations in both NOTCH1 and TP53. Combined, NOTCH1 (6.7%) and TP53 (6.2%) mutations represent 12.9% of the patients in this cohort and indicated a significant worse survival as compared to wildtype NOTCH1 and TP53 (Log rank analysis, p = 0.002) (Figure 2). NOTCH1 mutations may appear together with trisomy 12 [26, 27], and in our cohort, trisomy 12 was found in 15/152 patients by BAC (bacterial artificial chromosome) microarray analysis and two of these carried NOTCH1 mutation; this association was not significant (p = 0.56). By univariate analysis, the HR for death increased to 2.27 (1.32-3.91; 95% confidence interval) for tumors mutated in NOTCH1 or TP53 compared to NOTCH1 and TP53 wildtype tumors (p = 0.003) (Table 3). At the molecular level there seems to be an intriguing and complex link between p53 and NOTCH1. P53 induce NOTCH1 expression and seems to initiate an anti-apoptotic feedback mechanism with subsequent increased cell survival that may limit p53 promoting therapy with e.g. nutlins [28, 29]. NOTCH signaling blockade by γ-secretase inhibitors to stimulate apoptosis may be considered to be of therapeutic value at least for wt p53 CLL patients [28].

Among CLL patients with a mutated NOTCH1 gene 10/14 (71%) had an unmutated IGHV gene in contrast to 113/195 (58%) with a wildtype NOTCH1 gene, a difference that did not reach statistical significance (p = 0.22) (Figure 3 and Table 2). CLL with NOTCH1 mutations seemed to be more progressive, with a high frequency of unmutated IGHV gene and advanced Binet stages, indicating a more aggressive disease course.

Five patients in this cohort had NOTCH1 mutation at the time of diagnosis. For these patients the median time to first treatment was 101 days (range 21 to 145 days). For the whole group the median time from diagnosis to the first treatment was 438 days (range 0–6021 days). Further and expected, all patients with NOTCH1 mutations identified at diagnosis had the more advanced Binet stages B and C, a tendency that due to few observations did not reach significance (p = 0.11) (Table 2). The frequency of NOTCH1 mutations is also reported to be significantly higher in Richter syndrome, i.e., a progression of CLL into diffuse large lymphoma with often dismal outcome [8, 30], however our cohort contained no information on the prevalence of Richter syndrome.

It is now recommended to perform TP53 mutation analysis in patients with CLL as TP53 mutations occur in about 5% of cases in absence of 17p deletion and represent an independent prognostic factor associated with worse outcome [31]. CLL patients with 17p deletion and/or TP53 mutations are strongly associated with refractory disease, and also activated NOTCH1 mutations were recently suggested to cause refractoriness to fludarabine [8, 9, 32].

Our study confirms other recent reports that NOTCH1 mutation eliminating the PEST domain, has a prognostic value as a novel risk marker in CLL similar to TP53 mutations. Thus both NOTCH1 and TP53 mutation may be an indication for earlier and more active treatment or as an indicator for transplantation therapy.