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Circular RNA: new star, new hope in cancer

Abstract

Background

Circular RNAs are a new class of endogenous non-coding RNA that can function as crucial regulators of diverse cellular processes. The diverse types of circular RNAs with varying cytogenetics in cancer have also been reported.

Main body of the abstract

Circular RNAs can act as a microRNA sponge or through other mechanisms to regulate gene expression as either tumor inhibitors or accelerators, suggesting that circular RNAs can serve as newly developed biomarkers with clinic implications. Here, we summerized recent advances on circular RNAs in cancer and described a circular RNA network associated with tumorigenesis. The clinical implications of circular RNAs in cancer were also discussed in this paper.

Short conclusion

Growing evidence has revealed the crucial regulatory roles of circular RNAs in cancer and the elucidation of functional mechanisms involving circular RNAs would be helpful to construct a circRNA-miRNA-mRNA regulatory network. Moreover, circular RNAs can be easily detected due to their relative stability, widespread expression, and abundance in exosomes, blood and saliva; thus, circular RNAs have potential as new and ideal clinical biomarkers in cancer.

Peer Review reports

Background

More than 75% of non-coding RNAs have been found in transcription of the human genome [1]. Circular RNAs (circRNAs), 100 bp to 4 kb in size, were regarded as non-functional by-products of aberrant RNA splicing [2, 3]. Recently, with the improvements in novel next-generation deep sequencing and bioinformatics technology, an increasing number of circRNAs with regulatory functions were found in many tapes of cancers [4,5,6]. Unlike linear transcripts, the structures of circRNAs are covalently closed loops without tails in the 5′-3′ port, which stabilizes the structures enough to resist digestion by RNase [7,8,9,10]. CircRNAs are generally classified as three types: exonic circRNAs, exonic-intronic circRNAs and intronic circRNAs. Most exonic circRNAs exist in cytoplasm, whereas the other two are mainly found in cell nucleus [10]. Some circRNAs exist in human body fluid, making them easy to be detected [9, 10]. Most circRNAs are extremely abundant, relatively stable and widely expressed in eukaryotic cells, suggesting that circRNAs have potential regulatory roles [11].

Some circRNAs discovered in human tissues have been related to diverse cellular processes, including senescence, growth and apoptosis, etc. [12, 13]. Moreover, deregulated circRNA expression profiles correlated with some cancers have been identified, suggesting that circRNAs can function as tumor inhibitors or accelerators [14]. Emerging evidence that circRNAs are important regulators in cancer implies they might serve as new clinical biomarkers in cancer [15, 16]. This review concentrates on recent advances in circRNA research in cancer and summarizes the current significance of circRNAs in the clinical implications of cancer.

The regulation mechanisms of circRNAs

The regulation mechanisms of circRNAs have been revealed by increasing studies. The most notable of these mechanisms is that circRNAs can work as microRNA (miRNA) sponges. CircRNAs can block the binding of miRNAs with the 3’ UTR of a specific gene by directly binding to miRNAs, thus indirectly regulating the gene expression [17, 18]. For example, ciRS-7 can function as a sponge of miR-7 and consequently repress its function in cancer [19]. The second mechanism is that circRNAs play as regulators in gene expression by competing with mRNA production in pre-mRNA splicing [20]. Another mechanism of circRNAs involves binding to RNA binding proteins (RBPs) as transcription regulators [15, 16]. Moreover, circRNAs can serve as mRNA traps, another form of alternative splicing, and remove start codons from mature mRNAs to reduce protein translation in cancer [21] (Fig. 1).

Fig. 1
figure1

The regulation of circRNAs in cancer. a. CircRNAs function as microRNA (miRNA) sponges. b. CircRNAs bind RNA binding proteins (RBPs) as transcription regulators. c. CircRNAs remove start codons from mature mRNAs to reduce protein translation. d. CircRNA production competes with canonical pre-mRNA splicing in gene regulation. e. The translation of circRNAs is driven by N6-methyladenosine (m6A). f. CircRNAs with internal ribosome entry sites (IRESs) can be translated. g. EIciRNAs and ciRNAs promote transcription. h. Exo-circRNAs are cleared by the RES or excreted via the liver or kidneys. i. Exo-circRNAs regulate cancer immunity. j. Exo-circRNAs promote cancer metastasis

Translation of circRNAs

Translation of ncRNAs is poorly noted due to the classic ORFs longer than 100 codon are lacking. With more research on small open reading frames (sORFs), the proteins or peptides with biological functions that are translated by ncRNAs have received more attention [22]. CircRNAs, as a novel form of ncRNAs described in recent studies, have been found to be abundantly expressed in the cytoplasm, suggesting that they have the potential to regulate disease processes via translation of proteins or peptides [23]. Four mechanisms of circRNA protein or peptide translation have been identified. Wang et al. found that artificial synthetic circRNAs with internal ribosome entry sites (IRESs) can be translated [24]. Another mechanism has been found that circRNAs were effectively translated according to roll circle amplification (RCA) in human liver cells [25]. In addition, Yun et al. found that translation of circRNAs was driven by N6-methyladenosine (m6A) in human cells [26]. Recent research has found a novel cap-independent translation mechanism in circRNAs [22]. There have also been exciting breakthroughs in the study of circRNA protein translation as it relates to the regulation of cancer progression. FBXW7-185aa, which is translated from circ-FBXW7, regulates the stability of c-myc and inhibits the development of malignant glioma. This suggests that the functional protein resulting from circRNA translation may be a biomarker or therapeutic target for cancer. This demonstrates a new regulation mechanism of circRNAs in cancer [27] (Fig. 1).

Exosome delivery of circRNAs in cancer

Extracellular vesicles released by cells can be divided into three categories according to origin and size, including microvesicles, apoptotic bodies, and exosomes [28]. Many biological molecules exist in EVs, such as DNA, RNA, bioactive lipids, and proteins [28, 29]. Exosomes are approximately 30 to 100 nm in diameter and can be derived from many cells; in addition, exosomes can be transported from the originating cell to the recipient cell [30]. Exosomes with coding transcripts and non-coding RNAs are easily discovered in accessible body fluids, particularly blood, and are released more frequently by tumor cells, implying that exosomes can act as cancer communication agents to help cancer cells escape from immune surveillance and contribute to tumor formation [30, 31].

Recently, a number of studies have found that more exosomes are released from cancer cells than from normal cells. It was reported that circRNAs in gastric cancer (GC) can be transferred from GC cells to normal cells via exosomes, indicating that exo-circRNAs are important in the peritoneal metastasis of GC [32]. Moreover, deregulated circRNAs have been found in the exosomes of different cancers, and cancer-associated chromosomal translocations generate fusion-circRNAs-exosomes that can promote cellular transformation and tumor progression [33, 34]. Interestingly, other studies have also found that exosomes can participate in the clearance of intracellular circRNAs, and exosomes themselves can be further cleared by the reticuloendothelial system (RES) or excreted via the liver or kidneys [35, 36] (Fig. 1).

Expression profiles and identification of circRNAs in cancer

As microarray chip and next-generation sequencing technologies have been developed, many circRNAs were examined or identified in cancer samples. The expression profiles of circRNAs during the early stages of pancreatic ductal adenocarcinoma (PDAC) have been demonstrated, which revealed that deregulated circRNAs may participate in the progression of PDAC and potentially serve as a novel therapeutic biomarker [37, 38]. In another study, microarray analysis also showed that circRNA_100855 and circRNA_104912 are the most significantly deregulated circRNAs in laryngeal cancer tissues, whereas circRNA_001059 and circRNA_000167 are significantly deregulated in radioresistant esophageal cancer [39, 40]. In colorectal cancer, 379 dysregulated circRNAs were identified using circRNA microarray analysis [41].

In gliomas, RNA-Seq data showed the existence of over 476 deregulated circRNAs [42]. A recent study identified circRNAs associated with breast cancer subtypes using Circ-Seq [43]. Additionally, circRNA expression profiles in KRAS mutant colon cancer were identified from RNA-Seq data [44].

Interestingly, by combining microarray circRNA expression profiles with bioinformatics target prediction and sequence analysis, many deregulated circRNAs with miRNA response elements (MREs) have been identified in basal cell carcinoma (BBC) and cutaneous squamous cell carcinoma (CSCC) [45, 46]. More recently, it was reported that 69 differentially expressed circRNAs might interact with certain miRNAs to influence mRNA expression in gastric cancer (GC) [47].

The circRNA regulation network in cancer

Although the overall mechanisms of circRNAs in cancers have not been entirely elucidated, crucial regulatory roles of circRNAs in cancer have been revealed. Recent studies on circRNAs mainly focused on the roles as miRNA sponges, interactions with binding proteins and translation into proteins or peptides [22, 48]. An increasing amount of evidence has shown the involvement of circRNAs in regulatory signaling pathways that influence the progression and development of cancer,making circRNAs a potential therapeutic target [49]. Here, a clearer circRNA regulation network in cancer and its relevance to tumorigenesis is summarized (Fig. 2).

Fig. 2
figure2

Regulation network of circRNAs in cancer. CircRNA can act as sponge of miRNA or combine with protein to indirectly regulate gene expression in cancer. Circ-Foxo3, circDOCK and circUBAP2 are involved in regulating apoptosis in cancer. CircMTO1, circ100284, hsa_circ_0013958 and circTCF25 can regulate cell cycle through indirectly regulating cell cycle proteins in cancer. CiRS-7, circITCH, ciR-MYLK, circ-TTBK2 and circ_0009910 are involved in cell proliferation partly through PI3K/AKT pathway, Wnt/β-catenin pathway VEGFA/VEGFR2 pathway and JAK1/STAT3 pathway, respectively. CircHIAT1, circLARP4 and circHIPK3 are involved in invasion or metastasis through indirectly regulating CDC42, LATS1, and Heparanase in cancer, respectively. Different colores indicate different types of molecules: orange represents circRNA, pink represents miRNA, blue represents coding gene, gray represents signaling pathway

CircRNAs regulate apoptosis in cancer. It has been shown that circ-Foxo3 can promote MDM2-induced degradation of p53 by binding to MDM2 and p53; however, circ-Foxo3 contributes more to repression of MDM2-induced Foxo3 ubiquitination by binding to Foxo3 and thus increasing the expression of the downstream gene PUMA to induce apoptosis in breast carcinoma [50, 51]. In another study, increased circUBAP2 was found to upregulate its target Bcl-2 and inhibit apoptosis in osteosarcoma by sponging miR-143 [52].

CircRNAs regulate the cell cycle in cancer. It has been demonstrated that miR-7 can inhibit cancer progression by suppressing CCNE1 and PIK3CD in hepatocellular carcinoma (HCC) [53, 54]. A recent study proved that ciRS-7 can function as an oncogene to halt the cell cycle by upregulating CCNE1 and promoting cell proliferation via PI3K/AKT pathway by directly targeting miR-7 in HCC [55]. Moreover, deregulated miR-217 can target EZH2, which can increase the level of cyclin D1 to accelerate cell cycle progression and lead to malignant transformation. In addition, upregulated circ100284 can bind miR-217 and promote cell cycle progression in arsenic-induced skin cancer [56].

CircRNAs regulate cancer proliferation. The overall expression of circ-CDR1 can also increase EGFR expression and lead to cell proliferation by sponging miR-7 in HCC [57]. Additionally, it was revealed that circ-ITCH can inhibit miR-7 to partly enhance the effect of ITCH, which suppresses cell proliferation by inhibiting the Wnt/β-Catenin pathway in lung cancer and ESCC [58, 59]. In bladder cancer, another study demonstrated that circTCF25 can suppress miR-107 and miR-103a-3p to accelerate proliferation and migration, which led to increased CDK6 and further activation of cyclin D to promote cell cycle progression into the S phase [60].

CircRNAs regulate invasion and metastasis in cancer. Upregulated androgen receptor (AR) expression can accelerate the development of clear cell renal cell carcinoma (CCRCC) by inhibiting miR-145 [61]. Recently, a new mechanism of AR regulation was revealed. AR can enhance migration and invasion through circHIAT1-microRNA-protein signaling, and circHIAT1 can increase signaling by serving as a miRNA suppressor more so than a miRNA sponge in CCRCC [62]. Previous studies demonstrated that E2F5 can promote cell growth and is frequently observed in diverse human cancers [63]. Furthermore, overexpression of circ_001569 accelerates proliferation and invasion through targeting miR-145, which suppresses E2F5 and FMNL2 in colorectal cancer (CRC) [64]. In addition, it was reported that circHIPK3 competes with miR-558 to inhibit heparinase and cause rapid invasion metastasis in bladder cancer [65].

Although the rough roles of several circRNAs in some cancers have been confirmed, the functions and regulation pathways of most circRNAs in cancer remain to be revealed.

Clinically relevant implications of circRNAs in cancer

Differential expression profiling analysis and functional studies of circRNAs in tumors are important for the further understanding of circRNAs and cancer. Meanwhile, similar to microRNAs and lncRNAs, circRNAs also show potential as new independent diagnostic and prognostic biomarkers, which provides new approaches to improve clinical diagnosis and treatment. Here, we summarize currently known cancer-associated circRNAs related to clinical implications in Table 1 and mainly discuss the potential of some circRNAs as clinical biomarkers.

Table 1 Cancer associated circRNAs

CircRNAs in colorectal cancer

Colorectal cancer has become the fourth most deadly cancer in the world, and its occurrence is related to changes in individual genetics [66]. CircRNAs might potentially be a new biomarker to facilitate CRC diagnosis and prognosis. A positive correlation between several deregulated circRNAs in CRC and clinical indicators has been identified. For example, qRT-PCR analysis of 31 CRC patients showed that circ_001988 expression is downregulated and significantly associated with peripheral invasion and less differentiation [67]. Additionally, higher expression of hsa_circ_0007534 in CRC tumor tissue is associated with neoplasm staging and lymphatic metastasis [68]. CircRNAs may be used to predict prognosis in CRC, as Wang et al. found that patients with downregulated hsa_circ_0014717 have poorer OS and poor prognosis [69]. Moreover, overexpressed ciRS-7 can promote aggressiveness of CRC and is positively related with a high T-stage and lymphatic and distant metastasis, implying that ciRS-7 might be releated to a worse prognosis [70].

CircRNAs in hepatocellular carcinoma

HCC is responsible for nearly 90% of primary malignancies of the liver, and patients with advanced stage disease always have poor prognoses [71, 72]. CircRNAs might function as a prognostic predictor and therapeutic target in HCC. One study demonstrated that downregulated circ_0003570 is closely related to tumor diameter, differentiation status and vascular formation in HCC [73]. Another study revealed that downregulated circMTO1 is associated with dismal prognosis in HCC and that upregulated circMTO1 can act as a sponge of miR-9 to increase the level of p21 and inhibit the malignant development of HCC [74]. Moreover, upregulated circ_0005075 is correlated with larger tumor size and increased cell adhesion, whereas downregulated circZKSCAN1 is involved in several cancer-related signaling pathways to suppress the growth of HCC. Both of the AUROCs for these circRNAs indicated a potential diagnostic value [75, 76].

CircRNAs in gastric cancer

Although many efforts have been made to improve the diagnosis and therapy of GC, five-year OS rates in gastric cancer patients are still less than 30% [77]. New biomarkers for diagnosis and therapy are still necessary, and up to now, mostly low expression of circRNAs in GC has been observed. The clinical samples have been derived from not only tumor tissue and plasma but also gastric juice, suggesting that circRNAs may be useful potential biomarkers [78, 79]. The downregulated circ-104916 has been found to be associated with higher invasion, neoplasm staging and lymph node metastasis in GC [80]. Additionally, both circ_0000190 and circ_002059 are more lowly expressed in GC tissues, which is relevant to some clinical parameters [11, 81]. Furthermore, the expression of circ_0000181 is significantly decreased in GC, and circ_0000181 is associated with many clinical indicators in GC patients, implying that it might serve as a good biomarker [82].

CircRNAs in other cancers

In breast cancer, downregulated circ-Foxo3 can enhance cell survival and decrease cell apoptosis [52]. In bladder cancer, circPTK2 is highly expressed among fourty pairs of tissues and blood specimens, and its expression level is significantly associated with lower differentiation, N2-N3 lymphatic metastasis, and higher T stage [83]. In ESCC, circ_0067934 is significantly upregulated and associated with poor differentiation, whereas cir-ITCH is downregulated and functions as a tumor inhibitor by regulating tumor cell viability [59, 84]. In lung cancer and colorectal cancer, downregulated circ-ITCH plays an important tumor suppressor role [58, 85]. Upregulated circSMARCA5 can accelerate cell cycle and suppress apoptosis in prostate cancer [86]. In glioma, both circ-TTBK2 and cZNF292 are highly expressed and play crucial oncogenic roles in promoting glioma malignancy progression [87, 88].

CircRNAs in chemoradiation resistance

The emergence of chemoradiation resistance can lead to poor prognosis or recurrence [89,90,91]. At present, studies have found changed circRNA expression profiles in radioresistant ESCC cells, ADM-resistant breast cancer cells and 5-FU-based chemoradiation-resistant CRC cells. Through biological analysis, some circRNAs have been found to influence the chemoradiation resistance of cancer cells by regulating specific genes or pathways [40, 92,93,94]. Another study has revealed that downregulated circPVT1, which is overexpressed in osteosarcoma tissues and chemoradiation-resistant cells, can weaken expression of the classical chemoradiation resistance gene ABCB1 to reduce the resistance to cisplatin and doxorubicin in osteosarcoma cells [95]. Although there is still very little research regarding circRNAs and chemoradiation resistance in cancer, it has a great potential that circRNAs can be used as novel biomarkers to predict the efficiency of chemoradiation and prognosis or recurrence in drug-resistant cancers.

Conclusions

Many studies indicated that circRNAs, similar to miRNAs and lncRNAs, may have significant regulatory effects on pathophysiologic processes, including tumorigenesis. The connections of circRNAs with cancer has become a hot research field. CircRNAs can be easily detected due to their relative stability, widespread expression, and abundant presence in exosomes, blood and saliva, indicating that circRNAs might be novel and ideal diagnostic and prognostic biomarkers in cancer. In this paper, we drew conclusions about recent advances on circRNAs in cancer and presented a circRNA-mediated network involved in cell cycle control, apoptosis, proliferation, invasion and metastasis in cancer.

At present, some circRNA expression profiles in several cancers have been identified; however, there are still many questions that need to be addressed. Further investigation is needed regarding the various gene regulatory mechanisms of circRNAs other than miRNA sponges. The important relationship between the exo-circRNAs and tumor metastasis and the development of novel and valid ways to predict target genes of circRNAs using bioinformatics, among other issues, need to be addressed. This will provide new insights into circRNAs to construct circRNA-miRNA-mRNA regulation networks, reveal cancer pathogenesis mechanisms and seek novel potential diagnosis biomarker or therapeutic targets for future cancer management.

Abbreviations

Akt/PKB:

v-akt murine thymoma viral oncogene homolog 1/protein kinase B

AR:

Androgen receptor

BBC:

Basal cell carcinoma

BC:

Breast cancer

CCNE1:

Cyclin E1

CCRCC:

Clear cell renal cell carcinoma

CDK2:

Cyclin-dependent kinase2

CDK4:

Cyclin-dependent kinase4

CDK6:

Cyclin-dependent kinase6

circRNAs:

Circular RNAs

CRC:

Colorectal cancer

ESCC:

Esophageal cancer

EVs:

Extracellular vesicles

GC:

Gastric cancer

HCC:

Hepatocellular carcinoma

miRNA:

microRNA

mTOR:

Mammalian target of rapamycin

MVI:

Microvascular invasion

ncRNA:

Non-coding RNA

OS:

Overall survival

PDAC:

Pancreatic ductal adenocarcinoma

PIK3CD:

Phosphoinositide 3-kinase catalytic subunit delta

RBP:

RNA binding proteins

RES:

Reticuloendothelial system

RT-PCR:

Reverse transcription PCR

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Funding

This work was supported by the National Natural Science Foundation of China (81300398), the Natural Science Foundation of Guangdong Province (2015A030313528), the 2013 Sail Plan “Introduction of the Shortage of Top-Notch Talent” Project (YueRenCaiBan [2014] 1) and the Project of Administration of Traditional Chinese Medicine of Guangdong Province (20141277, 20162079). The funding body had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.

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ZKZ and QX wrote the manuscript and created the figures; DMH, YCL and YL collected the related paper; BJL and HZ provided guidance and revised this manuscript. All authors approved the final manuscript.

Correspondence to Jiangbin Li or Hua Zhang.

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Zhang, Z., Xie, Q., He, D. et al. Circular RNA: new star, new hope in cancer. BMC Cancer 18, 834 (2018). https://doi.org/10.1186/s12885-018-4689-7

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Keywords

  • Circular RNA
  • MicroRNA sponge
  • Cancer
  • Regulation network
  • Exosome
  • Clinical implication