- Research article
- Open Access
- Open Peer Review
The functional and structural characterization of a novel oncogene GIG47 involved in the breast tumorigenesis
- Kyou-Hoon Han†1,
- Si-Hyung Lee†1,
- Seon-Ah Ha†2,
- Hyun Kee Kim†2,
- CheWook Lee1,
- Do-Hyoung Kim1,
- Kee Hwan Gong2,
- JinAh Yoo2,
- Sanghee Kim2 and
- Jin Woo Kim2, 3Email author
© Han et al.; licensee BioMed Central Ltd. 2012
- Received: 25 December 2011
- Accepted: 2 July 2012
- Published: 2 July 2012
A candidate oncogene GIG47, previously known as a neudesin with a neurotrophic activity, was identified by applying the differential expression analysis method.
As a first step to understand the molecular role of GIG47, we analyzed the expression profile of GIG47 in multiple human cancers including the breast cancer and characterized its function related to human carcinogenesis. Based on this oncogenic role of GIG47, we then embarked on determining the high-resolution structure of GIG47. We have applied multidimensional heteronuclear NMR methods to GIG47.
GIG47 was over-expressed in primary breast tumors as well as other human tumors including carcinomas of the uterine cervix, malignant lymphoma, colon, lung, skin, and leukemia. To establish its role in the pathogenesis of breast cancer in humans, we generated stable transfectants of MCF7 cells. The ectopic expression of GIG47 in MCF7 cells promoted the invasiveness in the presence of 50% serum. In addition, it also resulted in the increased tumorigenicity in in vivo tumor formation assay. The tumorigenesis mechanism involving GIG47 might be mediated by the activation of MAPK and PI3K pathways. These results indicate that GIG47 plays a role in the breast tumorigenesis, thus representing a novel target for the treatment of breast cancer. To facilitate the development of GIG47-targeted therapeutics, we determined the structural configuration of GIG47. The high-resolution structure of GIG47 was obtained by combination of NMR and homology modeling. The overall structure of GIG47 has four α-helices and 6 β-strands, arranged in a β1-α1-β2-β3-α2-β4-α3-α4-β5-β6 topology. There is a potential heme/steroid binding pocket formed between two helices α2 and α3.
The determined three-dimensional structure of GIG47 may facilitate the development of potential anti-cancer agents.
- Breast cancer
- Three-dimensional structure
- Anti-cancer agents
Breast cancer is nowadays the most frequent malignant tumor in female, and morbidity and mortality continue to increase . Despite advances in early detection and the understanding of the molecular bases of breast cancer biology, about 30% of patients with early-stage breast cancer have recurrent disease. Furthermore, the course of the disease and response to treatment vary greatly . In view of the heterogeneity of breast carcinomas, the need for reliable diagnostic or therapeutic markers is obvious in terms of both their biological profile and their clinical outcome.
The identification of molecular alterations in cancerous and pre-cancerous cells has provided insight into the role of oncogenes and tumor suppressor genes in tumor initiation and progression . Oncogenes are derived from highly conserved protooncogenes that are altered by chromosomal point mutations, gene amplifications, or gene arrangements . The signal transduction pathways subverted by oncoproteins govern fundamental cell functions, including proliferation, cell cycle regulation, and apoptosis . Thus, the structural and functional characterization of oncoproteins underlying cancer will aid in developing the diagnostic and therapeutic avenues.
We measured gene expression levels in a series of breast normal and tumor primary tissues to discover genes involved in tumorigenesis of human breast tissue, and isolated the new human breast cancer-related gene, GIG47 (GenBank accession number AY762102). GIG47 corresponds to Homo sapiens neuron derived neurotrophic factor (NENF) (GenBank accession number NM_013349), which encodes a neurotrophic factor involved in neuron differentiation and development in mice [6, 7]. Mouse neudesin is a secreted protein with neurotrophic activity in neurons and undifferentiated neural cells [6, 7]. It exhibited a high similarity (∼90% identity) to human and rat neudesins. The neurotrophic activity of neudesin was mediated through the activation of mitogen-activated protein (MAP)  and phosphatidylinositol 3-kinase (PI-3 K)  pathways.
There are also previous reports on the functional aspect of GIG47 related to the tumorigeneis. According to these groups, GIG47 mRNA was up-regulated in immortalized cells . In agreement with this, the breast cancer proteomics approach demonstrated that GIG47 protein was abundant in estrogen receptor (ER)+/progesterone receptor (PR) + breast cancers . In spite of this previous research on GIG47 related to human cancer, its molecular function remains to be discovered.
As a first step to understand the molecular role of GIG47, we analyzed the expression profile of GIG47 in multiple human cancers including the breast cancer. This result revealed that GIG47 is highly up-regulated in most of human cancers. In addition, the ectopic expression of GIG47 promoted the invasiveness and tumorigenesis of breast cancer cells. Based on this oncogenic role of GIG47, we then embarked on determining the high-resolution structure of GIG47. Bioinformatics predictions and preliminary circular dichroism spectropolarimetry data indicated that GIG47 might belong to the family of intrinsically unfolded proteins (IUPs) with ~50% of its amino acid residues not participating in forming secondary and/or tertiary structure. As IUPs do not produce suitable single crystals for structural study by x-ray crystallography, we have applied multidimensional heteronuclear NMR methods to GIG47 that are currently best suited for characterizing structural features of IUPs [12–14].
The purpose of our study was to identify an unique gene that shows cancer-associated expression, to characterize its function related to human carcinogenesis, and to determine its three-dimensional structure.
Tissues and cell lines
For differential display of mRNA, normal and neoplastic breast tissue specimens were obtained from the surgical services of Gangnam St. Mary’s Hospital, The Catholic University of Korea (Seoul, Korea). Patient written consents were obtained from each individual and the use of tissue samples was approved by the ethics committee of our institution (Catholic ethics committee). Mammalian cell lines described below were all obtained from the American Type Culture Collection (Manassas, VA): MCF-7 and MDA-MB-231 cells are human breast adenocarcinoma. MCF-7 cell line was cultured in Eagle’s Minimum Essential Medium supplemented with 10% FBS and bovine insulin (0.01 mg/ml). MDA-MB-231 cell line was cultured in Leibovitz’s L-15 medium supplemented with 10% FBS.
Differential display reverse transcription-PCR (DDRT-PCR)
Total RNA was extracted from tissues with an RNA extraction kit (RNeasy total RNA kit, Qiagen Inc., Valencia, CA), and 0.2 μg of total RNA were used to generate cDNA in a reverse transcription reaction (RNAimage kit, GenHunter, Nashville, TN). With the use of the differential display kit (RNAimage kit), we performed PCR with oligo-dT primers and arbitrary sequences, each 13 bases in length according to the manufacturer’s recommendations. After cDNA of mRNAs was generated, the PCR products were separated by electrophoresis on a 6% denaturing polyacrylamide gel. The cDNA was then reamplified without [α-35 S]dATP and with 20 μM deoxynucleotide triphosphates instead of 2 μM deoxynucleotide triphosphates. From the films, a 206-bp cDNA (referred to as HP73) was identified by the use of 5’-arbitrary primer H-AP21 (5’-AAGCTTTCTCTGG-30) and 3’ H-T11C anchored primer (5’-AAGCTTTTTTTTTTTC-3’; GenHunter). HP73 was then subcloned into the pGEM-T easy vector with the use of the TA cloning system and sequenced to an automatic sequencing analysis [15, 16].
cDNA library screening
To isolate the full-length cDNA clone that contained the partial HP73 sequence, a bacteriophage λgt11 human lung embryonic fibroblast cDNA library was screened by plaque hybridization with 32P-labeled HP73 partial cDNA probe.
Construction of expression vector, DNA transfection, and western blotting
To generate an eukaryotic expression construct of GIG47, we amplified the coding region of GIG47 by PCR, which was then subcloned into pcDNA3.1 plasmid (pcDNA3.1 Directional TOPO expression kit, Invitrogen) according to the manufacturer’s recommendations. To express GIG47 in MCF7 cells, we seeded 3x105 cells per 60-mm tissue culture dish (Costar, Cambridge, MA). The next day, the cells were transfected with 10 μl of Lipofectamine 2000 reagent (Invitrogen, CA) and 5 μg of GIG47/pcDNA3.1 and pcDNA3.1 vector alone. After a 10-h incubation, the cells were cultured in media supplemented with 10% FBS.
For Western blot analysis, cells were lysed in a lysis buffer [20 mM Tris (pH 7.4), 1% NP40, 5 mM EDTA, 10% glycerol, 0.1% SDS, and 150 mM NaCl] containing protease inhibitor mixture (Sigma, St. Louis, MO). The cell lysates containing 20 μg of total protein were loaded on 10% SDS-polyacrylamide gels and separated by electrophoresis. Protein samples were then transferred to nitrocellulose membranes. The blots were incubated with polyclonal anti-V5 antibody (Invitrogen) and developed with the enhanced chemiluminescence detection kit (Amersham Pharmacia Biotech., Uppsala, Sweden).
Northern blot analyses
Total RNA was extracted from frozen human tissues with TRIzol reagent (Invitrogen). Northern blot analysis were carried out in which 20 μg of denatured total RNA were electrophoresed on a 1.0% formaldehyde agarose gel and transferred to a nylon membrane (Roche Diagnostics GmbH, Mannheim, Germany). The mRNA expression of GIG47 was also assessed in normal human tissues and a variety of human cancer cell lines with the use of membrane commercially available from Clontech (Palo Alto, CA), which was processed as recommended by the supplier. Human β-actin cDNA control probe provided by Clontech was used as a loading control. All blots were hybridized with the randomly primed [32P]-labeled GIG47 partial cDNA probe (the HP73 fragment).
Quantitative RT-PCR analysis
Total RNA was extracted from different cell lines and normal breast tissues using the RNAeasy minikit (Qiagen). The quality of the RNA was determined on agarose gel electrophoresis. After the spectrometric analysis, equal amounts of RNA were used for cDNA synthesis. After DNase treatment, oligo dT primers were used for first-strand cDNA synthesis. All procedures were performed according to the manufacturer’s instruction (Invitrogen). Quantitative PCR was performed on the CFX96 Real-time PCR Detection System using iQ SyberGreen supermix according to instructions and analyzed by software (all Bio-Rad Laboratories, CA). The primers were designed by BEACON DESIGNER (v7.5; Premier Biosoft International). Sequences were as follows: GIG47 forward: 5’-TGGCAGTGAAGGGAGTGGTGTTTG-3’, reverse: 5’- CCGTAGTGTCATGGGTGAGGTCTG-3’; β-actin forward: 5’-CTCTTCCAGCCTTCCTTCCT-3’, reverse: 5’-AGCACTGTGTTGGCGTACAG-3’.
Invasion assays were done using the Cell Invasion Assay kit (Chemicon International, Inc., CA). Briefly, cells (5,000/ml) were maintained in serum-free medium with or without 50% FBS as a chemoattractant at 37 °C for 24 hours. Invaded cells were subsequently detached, lysed, and detected by CyQuant GR dye using fluorescence plate reader Mithras LB 940 (Berthold Technologies, Germany).
5-week-old athymic nude mice (4–8 per group) were injected s.c. with 106 MCF7-GIG47 and MCF7-pcDNA3.1 cells into axillary mammary fat pads. Tumors were measured weekly and tumor areas were calculated as 1/4 x length x width x π. The data is reported as mean tumor area per group.
In order to express and purify GIG47, we have subcloned the synthesized GIG47 gene into a V3 expression vector, using Nhe I (GCTAGC) and Xho I (CTCGAG). Also, to enhance the solubility for facile purification of GIG47 and for sample preparation for NMR measurements we added his-tags to both N- and C- termini with the sequences of MHHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMASGG and GGGLEHHHHHH, respectively. Transformed Escherchia coli BL21(DE3) cells were grown at 37 °C to an OD600 of 0.6 and the culture was induced with 0.5 mM isopropyl thio-β-D-thiogalactopyranoside (IPTG). Then, the cells were further cultivated at 20 °C for 16 hours. The harvested cell suspension was sonicated in 20 mM Tris–HCl (pH 8), 0.5 M NaCl, 1 mM PMSF, 20 mM imidazole and centrifuged for 30 minutes at 30,000 × g. Both unlabeled and 13 C/15 N-labeled GIG47 were purified, using Ni-Sepharose column, Q-Sepharose column, SP-Sepharose column, and Hiprep 26/60 Sephacryl S-200 FPLC column (GE Healthcare). The molecular weight of the purified protein was confirmed by MALDI-TOF mass spectrometry.
NMR spectra were acquired using a Varian Unity INOVA 600 and Bruker Avance II 900 spectrometers equipped with cryogenic probes. For backbone assignment of the GIG47, 15 N-1 H HSQC, gnoesyNhsqc, gtocsyNhsqc, HNCACB, CBCACONNH, HNCO, HNCA, CCC-TOCSY, and HNCACO spectra were obtained at 30 °C in 20 mM sodium acetate-d3 (pH 6.5), 0.01 mM EDTA, 0.1 mM PMSF, 1 mM DTT, 0.1 mM benzamidine, 0.02% (w/v) NaN3, 90% H2O/10% 2H2O. The Cα CSI values were obtained based on the method of Wishart and Sykes [17–19]. All data were processed and analyzed using a Varian Vnmr software and an nmrPipe/nmrDraw software.
A CD spectrum was obtained with a 20 μM protein sample on a JASCO J-720 spectropolarimeter using a 1 mm cell in 20 mM sodium acetate (pH 6.5), 0.1 mM PMSF, 0.01 mM EDTA, 1 mM DTT, 0.1 mM benzamidine, 0.02% (w/v) NaN3 at 20 °C.
The high-resolution three-dimensional structure of GIG47 was determined by a homology modeling procedure MODELLER using 1TOG as a template according to a published protocol . 1TOG is a hypothetical protein At2g24940.1 found Arabidopsis thaliana (BMRB id: bmrb 6138) whose function is unknown . Since the sequence homology between the two proteins is ~ 49% (outside the twilight zone) calculating the structure of GIG47 by homology modeling is a reasonable strategy.
Cloning of GIG47 over-expressed in the breast cancer and GIG47 gene expressions in human cancers
To characterize its expression profile related to the breast cancer, we performed the quantitative PCR analysis in breast normal tissues and several breast cancer cell lines. As consistent with the result in Figure 1A, its expression was highly elevated in all breast cancer cell lines examined here compared to normal breast tissues (Figure 1B).
To assess whether our findings obtained from analyzing the breast cancer cells have physiological and clinical relevance, we examined GIG47 expression in tissue samples derived from primary breast cancers. The expression of GIG47 mRNA in breast tumor tissues was analyzed by Northern blotting on a breast normal and tumor tissue blot. We then observed that GIG47 mRNA level is highly up-regulated in the breast tumors compared to the normal breast tissue (Figure 1C). Therefore, our result suggests that GIG47 over-expressed in human breast cancer might play an important role in the breast tumorigenesis.
Northern hybridization was performed on a human normal multiple tissue mRNA blot and a human cancer cell line mRNA blot to analyze the GIG47 expressions in various normal tissues and cancer cell lines. The GIG47 mRNA (~ 1.0 Kb) was weakly expressed in many normal tissues, including the brain, skeletal muscle, colon, thymus, spleen, kidney, liver, small intestine, placenta, lung and leukocyte except normal heart in which GIG47 transcript was strongly expressed (Figure 1D). In contrast, its level was detected at a very high level in several cancer cell lines such as the promyelocytic leukemia cell line HL-60, cervical cancer cell line HeLa, a chronic myelogenous leukemia cell line K562, lymphoblastic leukemia cell line MOLT-4, Burkitt’s lymphoma cell line Raji, colon cancer cell line SW480, lung cancer cell line A549, and melanoma cell line G361 (Figure 1E). Thus, Northern blot analyses show that GIG47 mRNA exists abundantly in many cancer cell lines compared with its little or no expression in most normal tissues. This suggests that the functional role of GIG47 is required for various cancer cell types derived from different organs. We also added the expression profile of normal cell lines (Figure 1E). The normal cell lines included here are BJ, IMR-90, and MCF12F which are a human fibroblast from normal foreskin, a human lung cell fibroblast, and an epithelial cell line from normal mammary gland, respectively. As shown in the Figure 1E, the expression levels of GIG47 in human normal cell lines were relatively low.
Ectopic expression of GIG47 results in the increased tumorigenecity
As shown in Figure 2C, MCF7-GIG47 cells in the presence of chemoattractant (50% FBS) showed significantly increased invasiveness almost reaching the level of MDA-MB-231 cells used as a positive control whereas the invasiveness of MCF7 cells stably transfected with the vector alone remained low. All three MCF7-GIG47 clones showed the increased invasiveness compared to MCF7 control cells (Figure 2C).
To test the effect of GIG47 over-expression on tumorigenicity, two GIG47-over-expressing MCF7 clones (G3 and G7) as well as MCF7 cells stably transfected with pcDNA3.1 vector were bilaterally injected into the mammary fat pads of athymic nude mice. Both GIG47-overexpressing MCF7 clones showed increased tumor growth rate compared with MCF7 vector control (Figure 2D). Especially at week 8, tumors formed by MCF7-GIG47 cells were clearly larger than in the control group. Therefore, our result indicates that GIG47 over-expressed in multiple human cancers indeed serves to mediate the tumorigenesis in breast cancer.
We also perform the experiments to suggest the important function of GIG47 related to the tumorigenesis. To do this, we induced the over-expression of GIG47 in NIH/3 T3, a normal murine fibroblast cell line. We then tested its tumorigenecity with the proliferation and in vivo tumorigenecity assays. As shown in Figure 2E, the results show that the cell growth rate of NIH/3 T3 is significantly increased compared to control cells. In addition, the clonal population of NIH/3 T3 cells over-expressing GIG47 was bilaterally injected into the mammary fat pads of athymic nude mice together with NIH3T3 cells carrying the empty vector. We then assessed its tumor growth rate. The results showed that GIG47-overexpressing NIH/3 T3 clones exhibit the increased tumor growth rate compared with NIH/3 T3 cells vector control (Figure 2F). Especially at day 30, tumors formed by NIH3T3-GIG47 cells were clearly larger than in the control group. Therefore, these two additional experiments strongly support our conclusion that GIG47 over-expressed in multiple human cancers mediates the tumorigenesis.
The activation of MAP and PI-3 kinase pathways and the effect of GIG47 knockdown on the cell invasion
To further investigate the role of GIG47 in tumorigenecity, we performed the GIG47 knock-down experiments. The baseline expression of GIG47 was determined in a panel of human cancer cell lines as shown in Figure 1E. The results showed that GIG47 was abundantly expressed in most of human cancer cell lines. We then examined the relative mRNA levels of GIG47 in HeLa, MDA-MB-231, and A549 cells by real-time PCR analysis. All three cell lines expressed high levels of GIG47 in mRNA level (Figure 3B).
To determine whether GIG47 could be an effective therapeutic target for the cancer, the effect of GIG47 on cell tumorigenecity was examined. The efficacy of GIG47 siRNA for knockdown of GIG47 mRNA was confirmed by real-time PCR. We observed that GIG47 mRNA levels were significantly lowered in GIG47 siRNA-transfected cells (Figure 3B). The cell invasion was determined in MDA-MB-231 cells transfected with GIG47 siRNA. We then found that the down-regulation of GIG47 expression inhibited the cell invasion in MDA-MB-231 cells (Figure 3C). Therefore, all the data support our conclusion that GIG47 over-expressed in multiple human cancers mediates the tumorigenesis.
An overall structural analysis of GIG47 by CD and NMR techniques
In order to characterize the detailed conformational features of GIG47 we produced an 15 N/13 C double labeled recombinant GIG47 and analyzed it using heteronuclear multi-dimensional NMR techniques. A representative 15 N-1 H HSQC spectrum of GIG47 with assigned residues is shown in Figure 4B. With the two solubility-enhancing tags added to both termini of GIG47 the actual size of protein studied by NMR is 208 residues long. Thus, resonance overlap prevented a complete resonance assignment, but ~70% of GIG47 resonances could be assigned at a reliable level (Additional file 1: Table S1).
Determination of a high-resolution structure of GIG47
Shown in Figure 5B is the structure of GIG47 obtained by a homology modeling calculation  using 1TOG as a template. GIG47 consists of four α-helices (residues: 25–32, 55–58, 73–78, 95–112, denoted as α1 ~ α4) and 6 β-strands (residues: 23–24, 41–43, 48–50, 70–71, 115–117, 123–124, denoted as β1 ~ β6), arranged in a β1-α1-β2-β3-α2-β4-α3-α4-β5-β6 topology. GIG47 has two β-sheets: a short one consists of two β-strands arranged in parallel fashion (β1 and β6 in N- and C-terminal region, respectively) and the other consists of four β-strands (β4, β2, β3, and β5). Among them, β4 and β2 form a parallel β-sheet and β2, β3 and β5 form an antiparallel β-sheet. Three α-helices (α2, α3, and α4) lying over the antiparallel β-sheet and loop linking α2 with α3 form a wide pocket, which may play a role of hydrophobic binding pocket.
The final structure of GIG47 protein obtained by a combination of homology modeling calculation and NMR chemical shift assisted secondary structure prediction is similar to that of 1T0G. However, there are local structural differences between GIG47 and 1TOG. First, GIG47 has longer helices involving 25E ~ 32 G and 95A ~ 112 K than the corresponding helices (14A ~ 17 L and 84E ~ 98E, respectively) in 1T0G. Second, a short β-strand (β4) found in GIG47 is absent in 1TOG. Third, a long β-strand, V103VGRVV108, located at the C-terminal region of 1T0G are replaced by two short β-strands, 115I ~ 117 G and 123I ~ 124 L in GIG47. Two termini of GIG47 show disordered residues (22 and 23 residues at the N- and the C-terminus, respectively). When combined with a 49-residue solubility-enhancing tag inserted to the N-terminus of GIG47 the actual GIG47 protein studied by NMR contains a 71 disordered residues at its N-terminus.
To discover genes involved in human breast carcinogenesis, we applied DDRT-PCR and identified the candidate human breast cancer-related gene, GIG47 (GenBank accession number AY762102). GIG47 encodes neudesin, a neuron derived neurotrophic factor (NENF) (GenBank accession number NM_013349) in the database.
The neudesin gene has been identified in vertebrates including humans, mice, and zebrafish, but not in invertebrates. This indicates that the neudesin gene is specific to vertebrates. The human neudesin gene is located on chromosome 1 at p33; however, this location has not shown linkage with known inherited diseases . Neudesin is a novel secreted protein with essentially no primary structural homology to any known proteins. Its activity was governed by the activation of the MAP and PI-3 kinase pathways possibly via the activation of a Go/Giprotein-coupled receptor. Neudesin is therefore assumed to be a novel neurotrophic factor with a unique structure. Therefore, the study on neudesin may provide new insights into the neuronal development and maintenance .
However, study demonstrated that GIG47 mRNA is over-expressed in human immortalized cells . In addition, its protein was also detected as abundant among estrogen receptor (ER)+/progesterone receptor (PR) + breast cancers . Nevertheless, it is unknown how GIG47 contributes to the cellular and biochemical mechanisms of human tumorigenesis. In this study, our result also revealed that GIG47 is over-expressed in various human tumors including carcinomas of the uterine cervix, lymphoma, colon, lung, skin and leukemia, as well as carcinoma of the breast. In a sharp contrast, expression of GIG47 was generally low in diverse human normal tissues. It implies that GIG47 may play an oncogenic role in multiple body organs. In order to address this, we took advantage of ectopic over-expression system and demonstrated that GIG47, indeed, mediates the tumorigenesis of human breast cancer by promoting the invasiveness of breast cancer cells and tumor growth in vivo. Therefore, this result strongly supports that GIG47 plays a role in the human tumorigenesis.
Further understanding on GIG47 function and potentially useful information for designing anti-cancer pharmaceuticals may be provided by studying the structural characteristics of GIG47 at an atomic resolution. GIG47 itself shows a poor solubility when it is expressed alone. To obtain a more soluble protein we attached solubility-enhancing tags, which made the total length of the actual protein studied by NMR to consist of 208 residues. Consequently achieving a full resonance assignment was not possible. Nevertheless, as the assigned region of GIG47 has a strong sequence homology of ~50% to a hypothetical protein At2g24940.1 from Arabidopsis thaliana (1TOG) with an unknown function (Figure 5), we were able to produce a high-resolution structure of GIG47 by combining NMR chemical shift indices and homology modeling process. Thus our structure determination of GIG47 incidentally made it possible to assign function to a hypothetical protein with an unknown function.
In conclusion, GIG47 is over-expressed in various human tumors and plays an oncogenic role especially in the breast cancer. Although further investigation is needed, this result indicates that increased expression of the GIG47 may be associated with human tumorigenesis. Therefore, GIG47 might be a good target for developing diagnostic and therapeutic agents against human cancers when a detailed functional domain is identified using the three-dimensional structure of GIG47 determined in this investigation.
Conceived and designed the experiments: KH, JWK. Performed the experiments: KH, SL, SH, HKK, CL, DK, KWG, JY, SK. Analyzed the data: KH, SL, SH, HKK, JWK. Contributed reagents/materials/analysis tools: JY, SK, JWK. Wrote the paper: KH, SH, JWK. All authors read and approved the final manuscript.
This study was supported by a grant from SMBA (Small and Medium business Administration) of Korea.
- Gonzalez-Angulo AM, Morales-Vasquez F, Hortobagyi GN: Overview of resistance to systemic therapy in patients with breast cancer. Adv Exp Med Biol. 2007, 608: 1-22. 10.1007/978-0-387-74039-3_1.View ArticlePubMedGoogle Scholar
- Foekens JA, Peters HA, Portengen H, Noordergraaf E, Berns EMJ, Klijin JGM: Cell biological prognosis factors in breast cancer: a review. J Clin Immunoass. 1991, 14: 184-195.Google Scholar
- Weinberg RA: Oncogenes and tumor suppressor genes. CA Cancer J Clin. 1994, 44: 160-170. 10.3322/canjclin.44.3.160.View ArticlePubMedGoogle Scholar
- Bishop JM: Molecular themes in oncogenesis. Cell. 1991, 64: 235-248. 10.1016/0092-8674(91)90636-D.View ArticlePubMedGoogle Scholar
- Cooper GM: Oncogenes. 1995, Jones and Bartlett Publishers, BostonGoogle Scholar
- Kimura I, Yoshioka M, Konishi M, Miyake A, Itoh N: Neudesin, a novel secreted protein with a unique primary structure and neurotrophic activity. J Neurosci Res. 2005, 79 (3): 287-294. 10.1002/jnr.20356.View ArticlePubMedGoogle Scholar
- Kimura I, Nakayama Y, Yamauchi H, Konishi M, Miyake A, Mori M, Ohta M, Itoh N, Fujimoto M: Neurotrophic activity of neudesin, a novel extracellular heme-binding protein, is dependent on the binding of heme to its cytochrome b5-like heme/steroid-binding domain. J Biol Chem. 2008, 283 (7): 4323-4331.View ArticlePubMedGoogle Scholar
- Kimura I, Konishi M, Asaki T, Furukawa N, Ukai K, Mori M, Hirasawa A, Tsujimoto G, Ohta M, Itoh N, Fujimoto M: Neudesin, an extracellular heme-binding protein, suppresses adipogenesis in 3 T3-L1 cells via the MAPK cascade. Biochem Biophys Res Commun. 2009, 381 (1): 75-80. 10.1016/j.bbrc.2009.02.011.View ArticlePubMedGoogle Scholar
- Kimura I, Konishi M, Miyake A, Fujimoto M, Itoh N: Neudesin, a secreted factor, promotes neural cell proliferation and neuronal differentiation in mouse neural precursor cells. J Neurosci Res. 2006, 83 (8): 1415-1424. 10.1002/jnr.20849.View ArticlePubMedGoogle Scholar
- Ma L, Broomfield S, Lavery C, Lin SL, Xiao W, Bacchetti S: Up-regulation of CIR1/CROC1 expression upon cell immortalization and in tumor-derived human cell lines. Oncogene. 1998, 17 (10): 1321-1326. 10.1038/sj.onc.1202058.View ArticlePubMedGoogle Scholar
- Neubauer H, Clare SE, Kurek R, Fehm T, Wallwiener D, Sotlar K, Nordheim A, Wozny W, Schwall GP, Poznanović S: Breast cancer proteomics by laser capture microdissection, sample pooling, 54-cm IPG IEF, and differential iodine radioisotope detection. Electrophoresis. 2006, 27 (9): 1840-1852. 10.1002/elps.200500739.View ArticlePubMedGoogle Scholar
- Lee H, Mok KH, Muhandiram R, Park KH, Suk JE, Kim DH, Chang J, Sung YC, Choi KY, Han KH: Local structural elements in the mostly unstructured transcriptional activation domain of human p53. J Biol Chem. 2000, 275: 29426-29432. 10.1074/jbc.M003107200.View ArticlePubMedGoogle Scholar
- Chi SW, Lee SH, Kim DH, Ahn MJ, Kim JS, Woo JY, Torizawa T, Kainosho M, Han KH: Structural details on mdm2-p53 interaction. J Biol Chem. 2005, 280: 38795-38802. 10.1074/jbc.M508578200.View ArticlePubMedGoogle Scholar
- Chi SW, Kim DH, Lee SH, Chang I, Han KH: Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus. Protein Sci. 2007, 16: 2108-2117. 10.1110/ps.072983507.View ArticlePubMedPubMed CentralGoogle Scholar
- Liang P, Pardee AB: Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science. 1992, 257 (5072): 967-971. 10.1126/science.1354393.View ArticlePubMedGoogle Scholar
- Liang P, Pardee AB: Analysing differential gene expression in cancer. Nat Rev Cancer. 2003, 3 (11): 869-876. 10.1038/nrc1214.View ArticlePubMedGoogle Scholar
- Wishart DS, Sykes BD: Chemical shifts as a tool for structure determination. Methods Enzymol. 1994, 239: 363-392.View ArticlePubMedGoogle Scholar
- Wishart DS, Bigam CG, Yao J, Abildgaard F, Dyson HJ, Oldfield E, Markley JL, Sykes BD: 1H, 13C and 15N chemical shift referencing in biomolecular NMR. J Biomol NMR. 1995, 6: 135-140.View ArticlePubMedGoogle Scholar
- Schwarzinger S, Kroon GJ, Foss TR, Chung J, Wright PE, Dyson HJ: Sequence-dependent correction of random coil NMR chemical shifts. J Am Chem Soc. 2001, 123: 2970-2978. 10.1021/ja003760i.View ArticlePubMedGoogle Scholar
- Eswar N, Eramian D, Webb B, Shen MY, Sali A: Protein structure modeling with MODELLER. Methods Mol Biol. 2008, 426: 145-159. 10.1007/978-1-60327-058-8_8.View ArticlePubMedGoogle Scholar
- Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL: Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold. J Biomol NMR. 2004, 30: 215-218.View ArticlePubMedGoogle Scholar
- Linding R, Russell RB, Neduva V, Gibson TJ: GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res. 2003, 31: 3701-3708. 10.1093/nar/gkg519.View ArticlePubMedPubMed CentralGoogle Scholar
- Kussie PH, Gorina S, Marechal V, Elenbaas B, Moreau J, Levine AJ, Pavletich NP: Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain. Science. 1996, 274: 948-953. 10.1126/science.274.5289.948.View ArticlePubMedGoogle Scholar
- Schon O, Friedler A, Bycroft M, Freund SM, Fersht AR: Molecular mechanism of the interaction between MDM2 and p53. J Mol Biol. 2002, 323: 491-501. 10.1016/S0022-2836(02)00852-5.View ArticlePubMedGoogle Scholar
- Vassilev LT, Vu BT, Graves B, Carvajal D, Podlaski F, Filipovic Z, Kong N, Kammlott U, Lukacs C, Klein C: In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science. 2004, 303: 844-848. 10.1126/science.1092472.View ArticlePubMedGoogle Scholar
- García-Echeverría C, Chène P, Blommers MJ, Furet P: Discovery of potent antagonists of the interaction between human double minute 2 and tumor suppressor p53. J Med Chem. 2000, 43: 3205-3208. 10.1021/jm990966p.View ArticlePubMedGoogle Scholar
- Liu R, Hu J: HemeBIND: a novel method for heme binding residue rediction by combining structural and sequence information. BMC Bioinfirmatics. 2011, 12: 207-10.1186/1471-2105-12-207.View ArticleGoogle Scholar
- Min L, Strushkevich NV, Harnastai IN, Iwamoto H, Gilep AA, Takemori H, Usanov SA, Nonaka Y, Hori H, Gavin P: Molecular identification of adrenal inner zone antigen as a heme-binding protein. FEBS J. 2005, 272: 5832-5843. 10.1111/j.1742-4658.2005.04977.x.View ArticlePubMedGoogle Scholar
- The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2407/12/274/prepub
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.