Tissue collection
For immunostaining of RPL15, tissue arrays was purchased from Cybrdi Co. (Chaoying Biotechnology Co., Xi'an, China), which contained 46 sections from normal gastric mucosa, gastric adenocarcinoma and adjacent nontumorous tissues respectively. For Western blotting, gastric cancer and adjacent nontumorous tissues were obtained from 12 patients who underwent surgery at the Department of General Surgery in our hospital. All cases of gastric cancer and normal gastric mucosa were clinically and pathologically proved. The protocols used in the studies were approved by the Hospital's Protection of Human Subjects Committee. Patients having fresh surgical tissue for the study signed informed consent.
Cell lines and animals
Gastric cancer cell lines AGS, MKN45, MKN28, SGC7901, KATOIII, and SV40-transformed immortal gastric epithelial cell GES-1 were preserved in our department. Cells were routinely cultured in RPMI 1640 medium (Life Technologies, Inc., Gaithersburg, MD) supplemented with 10% fetal calf serum in a 37°C humidified incubator with a mixture of 95% air and 5% CO2. BALB/c nude mice, 4 to 6 weeks old, were provided by Shanghai Cancer Institute for the in vivo tumorigenicity study. The experiment was performed along established, institutional animal welfare guidelines concordant with NIH species criteria.
Antibody
Polyclonal antibodies were prepared against a peptide (C) RVRCWQYRQLSALHR from the sequence of RPL15. Antibodies were commercially prepared by immunization of 2 rabbits (Biosynthesis Biotechnology Co., Beijing, China). The antibody was affinity purified against the peptide on a Sulfolink column (Pierce) and used at 2 μg/ml and 6 μg/ml in western blot and immunohistochemistry respectively.
Immunohistochemistry
Tissue arrays were dewaxed, rehydrated, incubated in 10% normal goat serum and 0.3% Triton X-100 in PBS for 1 hr and then incubated with anti-RPL15 antibody. The arrays were washed in PBS 3 times for 5 min each. The tissues were incubated in biotin-labeled goat anti-mouse serum (1:200) for 30 min, rinsed with PBS and incubated with avidin-biotin-peroxidase complex for 1 hr. The signal was detected using 3,3-diaminobenzidine as the chromogen. Only cells with brown-colored cytoplasmic staining were considered as positive. Result was evaluated by formula as described previously [10]: the staining score = the intensity of immunoreactivity (IR) × the proportion of positively staining cells. The intensity of IR was stratified into 4 categories: 0, no IR; 1, weak IR; 2, moderate IR and 3, strong IR. The proportion of positive cells was classified into 4 groups: 0, 0–5% tumor cells exhibiting IR; 0.33, 5–33% of the tumor cells exhibiting IR; 0.67, 33–67% of the tumor cells exhibiting IR and 1, 67–100% of the tumor cells exhibiting IR.
Plasmid construction
For the construction of pSilencer-RPL15A and pSilencer-RPL15B, two pairs of oligonucleotides were respectively synthesized as follows: P1: 5'-GAT CCA GAA GCA GTC TGA TGT CAT TAC AAG AGA ATG ACA TCA GAC TGC TTC TTT TTT TGG AAA-3'; P1': 5'-AGC TTT TCC AAA AAA AGA AGC AGT CTG ATG TCA TTC TCT TGT AAT GAC ATC AGA CTG CTT CTG-3'; P2: 5'-GAT CCG GTT ACG TTA TAT ATA GGA TTC AAG AGA TCC TAT ATA TAA CGT AAC CTT TTT TGG AAA-3'; P2': 5'-AGC TTT TCC AAA AAA GGT TAC GTT ATA TAT AGG ATC TCT TGA ATC CTA TAT ATA ACG TAA CCG-3'. The two oligonucleotides were annealed and cloned into pSilencer3.0 (Ambion, Austin, TX), respectively. The insert sequences were confirmed by DNA sequencing.
Cell transfection
Cell transfection were performed with Lipofectamine 2000 (Invitrogen, Carlsbad, CA) as described in the manufacturer. Briefly, SGC7901 cells were plated and grown to 80–90% confluence without antibiotics. Then they were transfected with 1 μg siRNA expressing vector pSilencer-RPL15A or pSilencer-RPL15B. After 24 h of transfection, G418 (400 μg/ml) was added into cells for stable screening. The mixed clones were expanded for an additional 2 months. Cells transfected with pSilencer-RPL15A, pSilencer-RPL15B or empty vector pSilencer3.0 were designated as SGC7901-L15AsiRNA, SGC7901-L15BsiRNA and SGC7901-pcDNA respectively.
Western blot
Cells grown to 70–90% confluence were collected by scraping and washed with ice-cold PBS for two times. The cell pellets or tissues were homogenized in extraction buffer (50 mM Tris-HCl, 0.1%SDS, 150 mM NaCl, 100 μg/ml phenylmethylsulfonyl fluoride, 1 μg/ml aprotinin, 1% NP-40, and 0.5% sodium orthovanadate), then incubated at 4°C for 30 min, centrifuged 20 min at 12,000 g/min. Concentration of total proteins in the supernatant was quantified by Bradford assay. The total proteins (50–100 μg/lane) were resolved in 8–12% SDS-polycrylamide gels, then transferred onto nitrocellulose membrane (0.45 μm, Millipore, USA) in 25 mM Tris-base, 190 mM glycine, and 20% methanol using a semi-dry blotter. Following blocking with 8% fat-free milk and 0.1% Tween20 in TBS for 2 h, the membrane was incubated with anti-RPL15, anti-Cyclin D1(Neomarker, 1:200), anti-Cyclin B1(Neomarker, 1:200) and anti-β-actin(Sigma, 1:5000) at 4°C overnight. After binding of horseradish peroxidase (HRP)-coupled goat anti-mouse or goat anti-rabbit IgG (Santa Cruz, 1:5000) at room temperature for 2 hours, antigens were visualized by enhanced chemiluminescence (ECL-kit, Santa Cruz Biotechnology). All results are representatives of three independent experiments.
MTT assay
3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide assay was performed to evaluate the speed of cell proliferation as described before [11]. Briefly, log phase cells were trypsinized into single cell suspension and passaged into 96-well plates at a density of 1 × 103 cells/well. The total volume of culture medium in each well was 200 μl. After 1 d, 2 d, 3 d, 4 d and 5 d of cell culture, MTT solution was added into each well. After 4 hrs, the supernatant was carefully removed. 150 μl DMSO was used to dissolve the crystals by agitation for 10 min. The absorbance at 490 nm (A490) of each well was read on a microplate reader BP800 (BIOHIT). Each study was performed in quadruplicate and repeated 3 times.
Flow cytometry
Cells in log phase were washed twice with PBS and fixed with 70% ethanol, washed again, and resuspended at 37°C for 15 min in PI staining solution (PBS containing 0.1% (v/v) Triton X-100 (Sigma), 0.2 mg/ml Dnase-free RNase A (Roche), and 20 μg/ml PI), prepared fresh daily. 1 × 104 cells were then analyzed for fluorescence intensity by FACScan (BD Biosciences) using the CellQuest flow-cytometric analysis software. Cell proliferation index is calculated with the formula: PI (proliferation index) = number of S, G2 and M stage cells/number of total cells ×100%. Each study was repeated 4 times.
Soft agar clonogenic assay
Anchorage-independent growth as a characteristic of in vitro tumorigenicity was assessed by soft agar clonogenic assay described previously [11]. Briefly, cells were detached and plated in 0.3% agarose with a 0.5% agarose underlay (1 × 103/well in 6-well plates). The number of foci >100 μm in 10 randomly selected field was counted under microscope after 20 days. Each study was performed in triplicate and repeated 3 times.
Mouse experiments
Mice were handled using best humane practices and were cared for in accordance with NIH Animal Care and Use Committee guidelines. Cells were harvested from tissue culture flasks using trypsin and resuspended in PBS. Mice were injected subcutaneously with 2 × 106 cells in 0.1 ml into the right upper back and raised in the following 30 days. The mice were then monitored for tumor volume, overall health, and total body weight. The size of the tumor was determined by caliper measurement of the subcutaneous tumor mass. Tumor volume was calculated according to the formula 0.5 × length × width2. Each experimental group contained 6 mice. Two independent experiments were performed and gave similar results.
Statistical analysis
Bands from Western blot or RT-PCR were quantified by Quantity One software (BioRad). Relative protein or mRNA levels were calculated by referring them to the amount of β-actin. Numerical data are presented as the mean ± SEM. The difference between means was performed with Student's T test. Immunohistochemical results were analyzed by Kruskal-Wallis rank test and the Mann-Whitney U test. All statistical analyses were performed using SPSS11.0 software (Chicago, IL, USA). p < 0.05 was considered as statistically significant.
