Table 2 Overlap of fusions between the three cohorts as well as their occurrence in Mitelman DB
Fusion | FFPE_Bx | FF_RP | TCGA_PRAD | Known |
|---|---|---|---|---|
ERG(30,742),NCRNA00114(46,499)::ERG | 1 | 1 | 1 | FALSE |
AMACR::AMACR | 1 | 1 | 1 | FALSE |
FSIP1::RP11-624L4.1 | 1 | 1 | 1 | FALSE |
MBTPS2(33,120),LL0XNC01-39B3.1(20,917)::SMS | 1 | 1 | 1 | FALSE |
AMBRA1::CKAP5 | 1 | 1 | 0 | FALSE |
THBS1::RP11-624L4.1 | 1 | 1 | 0 | FALSE |
LINC00506(49,329),MIR4795(19,791)::CHMP2B | 1 | 1 | 0 | FALSE |
RP11-159H20.3(25,945),FOXB2(602)::PRUNE2 | 1 | 1 | 0 | FALSE |
RP11-597A11.11::RP11-597A11.1 | 1 | 1 | 0 | FALSE |
AC004921.2(27,972),PTPN12(47,164)::GSAP | 1 | 1 | 0 | FALSE |
RP11-356O9.1::ETV1 | 1 | 0 | 1 | FALSE |
PTEN::RP11-380G5.4(8171),RP11-129G17.2(201,135) | 1 | 0 | 1 | FALSE |
PTEN::RNLS | 1 | 0 | 1 | FALSE |
MAPKAPK5::ACAD10 | 1 | 0 | 1 | FALSE |
ACPP::CPNE4 | 1 | 0 | 1 | FALSE |
CTC-340A15.2::CTC-535M15.2 | 1 | 0 | 1 | FALSE |
PLPP1::SKIV2L2 | 1 | 0 | 1 | FALSE |
SCHLAP1::UBE2E3 | 1 | 0 | 1 | FALSE |
RP11-17A19.1::KCTD1 | 1 | 0 | 1 | FALSE |
ZFHX3::AC004158.2 | 1 | 0 | 1 | FALSE |
RP11-356O9.1::MIPOL1 | 0 | 1 | 1 | FALSE |
TTC6::SLC25A21 | 0 | 1 | 1 | FALSE |
RP11-599B13.3::ETV1 | 0 | 1 | 1 | FALSE |
C1QTNF3-AMACR::AMACR | 0 | 1 | 1 | FALSE |
RP11-492D6.3::RP11-810K23.8(24,509),RP11-810K23.6(7644) | 0 | 1 | 1 | FALSE |
SLC45A3::ELK4 | 1 | 1 | 1 | TRUE |
TMPRSS2::ERG | 1 | 1 | 1 | TRUE |
TMPRSS2::ETV4 | 1 | 1 | 1 | TRUE |
TTC6::MIPOL1 | 1 | 1 | 1 | TRUE |
SLC45A3::ERG | 1 | 1 | 1 | TRUE |
ERG::TMPRSS2 | 1 | 0 | 1 | TRUE |
PMEPA1::ETV4 | 1 | 0 | 1 | TRUE |
SLC45A3::ETV1 | 1 | 0 | 1 | TRUE |
IQSEC1::SCCPDH | 1 | 0 | 1 | TRUE |
GPATCH8::PYY | 1 | 0 | 1 | TRUE |
PDZRN3::EIF4E3 | 0 | 1 | 1 | TRUE |