From: Genome-wide association study of serum tumor markers in Southern Chinese Han population
Tumor maker | Gene | SNP ID | Chr | Position | Alleles | MA | MAF | Func | β | SE | p |
---|---|---|---|---|---|---|---|---|---|---|---|
AFP | LOC100287704/LOC100287834 | rs1524622 | 7 | 63375308 | C/T | C | 0.163 | intronic | 0.424 | 0.090 | 3.59E-06 |
SGCZ | rs143687479 | 8 | 14561503 | C/T | C | 0.004 | intronic | 2.585 | 0.552 | 3.86E-06 | |
ZNF444/GALP | rs10425983 | 19 | 56167810 | A/G | A | 0.006 | intergenic | -1.995 | 0.430 | 4.67E-06 | |
CA50 | RBFOX2/APOL3 | rs112401204 | 22 | 36114041 | T/C | T | 0.073 | intergenic | -0.750 | 0.150 | 1.12E-06 |
LINC00533/LINC01623 | rs9295778 | 6 | 28716406 | T/G | T | 0.062 | intergenic | 0.782 | 0.157 | 1.15E-06 | |
CA125 | GCFC2/LRRTM4 | rs75332508 | 2 | 76156698 | T/C | T | 0.013 | intergenic | -1.545 | 0.297 | 3.10E-07 |
LINC01790/SLC39A10 | rs12476806 | 2 | 195329086 | C/T | C | 0.175 | intergenic | 0.396 | 0.084 | 3.25E-06 | |
D2HGDH/GAL3ST2 | rs7563672 | 2 | 241773455 | T/G | T | 0.358 | intergenic | -0.306 | 0.065 | 3.70E-06 | |
LOC728613/MIR4277 | rs6554915 | 5 | 1639786 | C/T | C | 0.129 | intergenic | 0.487 | 0.103 | 2.88E-06 | |
CDK17/CFAP54 | rs2028385 | 12 | 96423644 | G/A | G | 0.289 | intergenic | 0.357 | 0.071 | 6.67E-07 | |
CA153 | MUC1 | rs4072037 | 1 | 155192276 | C/T | C | 0.161 | exonic | 1.097 | 0.110 | 1.28E-18 |
PCDH7 | rs112804057 | 4 | 30878623 | G/C | G | 0.021 | intronic | 1.651 | 0.339 | 2.61E-06 | |
LOC100128317 | rs12113394 | 7 | 81597863 | G/A | G | 0.197 | ncRNA_intronic | 0.692 | 0.126 | 1.45E-07 | |
PTDSS1/LOC102724804 | rs7838015 | 8 | 96340364 | C/T | C | 0.140 | intergenic | 0.699 | 0.144 | 2.86E-06 | |
ABO | rs1053878 | 9 | 133256264 | A/G | A | 0.164 | exonic | -0.646 | 0.129 | 1.33E-06 | |
KCNH5 | rs8015097 | 14 | 62895145 | G/C | G | 0.321 | intronic | -0.473 | 0.098 | 3.44E-06 | |
RASGEF1C | rs62406978 | 5 | 180204890 | T/A | T | 0.016 | intronic | 1.895 | 0.397 | 4.12E-06 | |
CA19-9 | DPP10 | rs67300776 | 2 | 115190571 | T/G | T | 0.347 | intronic | -0.322 | 0.069 | 4.41E-06 |
ADAMTS9-AS2/MAGI1 | rs1482587 | 3 | 65151572 | C/T | C | 0.491 | intergenic | 0.327 | 0.066 | 9.00E-07 | |
ADRA1B/TTC1 | rs147309725 | 5 | 160000916 | A/G | A | 0.097 | intergenic | -0.543 | 0.115 | 3.05E-06 | |
LOC389602/LOC285889 | rs4716999 | 7 | 156160296 | C/T | C | 0.382 | intergenic | -0.360 | 0.071 | 6.50E-07 | |
CEA | TMEM132D | rs11060471 | 12 | 129627766 | T/C | T | 0.326 | intronic | -0.349 | 0.071 | 1.25E-06 |
FARP1 | rs17568726 | 13 | 98361516 | C/G | C | 0.310 | intronic | -0.352 | 0.073 | 1.99E-06 | |
f-PSA | PDE4B | rs72641143 | 1 | 66233311 | C/T | C | 0.081 | intronic | -0.798 | 0.170 | 4.78E-06 |
PAM | rs466235 | 5 | 102762878 | C/T | C | 0.443 | intronic | -0.453 | 0.095 | 3.06E-06 | |
PCAT5/ANKRD30A | rs78255505 | 10 | 37091392 | C/T | C | 0.063 | intergenic | -0.892 | 0.185 | 2.67E-06 | |
PABPN1L/CBFA2T3 | rs113984953 | 16 | 88872490 | A/G | A | 0.128 | intergenic | -0.641 | 0.134 | 2.96E-06 | |
ERG | rs4816598 | 21 | 38551999 | T/C | T | 0.167 | intronic | -0.614 | 0.123 | 1.22E-06 | |
SCC-Ag | MIR6072/LINC00701 | rs111241781 | 10 | 2077191 | C/T | C | 0.035 | intergenic | 0.917 | 0.187 | 1.37E-06 |
HNF4G/LINC01111 | rs117089993 | 8 | 75885175 | T/A | T | 0.025 | intergenic | 0.991 | 0.212 | 4.10E-06 | |
SHISA9/ERCC4 | rs72773580 | 16 | 13562027 | A/G | A | 0.040 | intergenic | -0.878 | 0.173 | 6.24E-07 |