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Table 8 Gene sets enriched in low risk phenotype via KEGG

From: A novel immune-related gene pair prognostic signature for predicting overall survival in bladder cancer

Gene set name NES NOM p-val FDR q-val
KEGG_PEROXISOME −1.986 < 0.001 1.467
KEGG_LINOLEIC_ACID_METABOLISM −1.934 < 0.001 1.397
KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION −2.150 0.002 1.568
KEGG_CYTOSOLIC_DNA_SENSING_PATHWAY −2.070 0.004 1.419
KEGG_RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY −1.912 0.008 1.425
KEGG_AUTOIMMUNE_THYROID_DISEASE −2.013 0.008 1.479
KEGG_GRAFT_VERSUS_HOST_DISEASE −1.959 0.008 1.425
KEGG_ALLOGRAFT_REJECTION −1.926 0.012 1.431
KEGG_PRIMARY_IMMUNODEFICIENCY −1.777 0.028 1.053
KEGG_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 −1.678 0.030 0.943
KEGG_ETHER_LIPID_METABOLISM −1.507 0.031 0.691
KEGG_AMINOACYL_TRNA_BIOSYNTHESIS −1.645 0.036 0.895
KEGG_INTESTINAL_IMMUNE_NETWORK_FOR_IGA_PRODUCTION −1.716 0.039 0.969
  1. Gene sets with NOM p-val < 0.05 and FDR q-val < 0.25 are considered as significant
  2. KEGG The Kyoto Encyclopedia of Genes and Genomes, NES normalized enrichment score, NOM nominal, FDR false discovery rate
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BMC Cancer

ISSN: 1471-2407

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