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Table 2 Brief information on target predicted databases was shown to find putative targets possessing binding sequence to miR-1275

From: MACE-Seq-based coding RNA and TrueQuant-based small RNA profile in breast cancer: tumor-suppressive miRNA-1275 identified as a novel marker

Target predicted sites

Species

Tool properties

Website

Websites

miRTarBase

Human, Mouse, Rat

Conservation, seed location

http://mirtarbase.mbc.nctu.edu.tw/php/index.php

Target scan

Human, Mouse, Fly, Fish, and Worm

Conservation, seed location

http://www.targetscan.org/

TargetMiner

Human, Mouse, Rat, Fly

Conservation, seed location

https://www.isical.ac.in/~bioinfo_miu/TargetMiner.html

MirTar2

Human, Mouse, rat, Dog and Chicken

Conservation, seed location

http://www.mirdb.org/

DIANA

Any

Conservation, seed match, and free energy

http://www.microrna.gr/microT-CDS

miRWalk

Human, Mouse, and Rat

Conservation, seed match and free energy

http://mirwalk.uni-hd.de/

miRmap

Human, Chimpanzee, Mouse, Rat, Cow, Chicken, Zebrafish, and Opossum

Conservation, seed match, and free energy

https://mirmap.ezlab.org/

RNA22

Human, Fruit Fly, Mouse, and Worm

Seed match and free energy

https://cm.jefferson.edu/rna22/

PicTar - Tools4miRs

Human, Mouse, Rat, Fly

Conservation, seed location

https://tools4mirs.org/software/target_prediction/pictar/

mirPath

Human, Mouse, D. melanogaster, C. elegans, R. norvegicus, D. rerio and G. gallus

Conservation, seed match and free energy

http://snf-515788.vm.okeanos.grnet.gr/index.php?r=mirpath/geneList

Microrna. org

Human, mouse, Fruit Fly, and rat

Conservation, seed match, free energy

http://www.microrna.org/