Table 11 For genes with at least five hemimethylation sites in both tumor and normal samples

RGPD5

16

–

RANBP2 like and GRIP domain containing 5

RGPD8

16

–

RANBP2 like and GRIP domain containing 8

ROCK1P1

13

–

Rho associated coiled-coil containing protein kinase 1 pseudogene 1

THAP4

8

–

THAP domain containing 4

SGTA

8

–

small glutamine rich tetratricopeptide repeat containing alpha

PTPRN2

7

–

protein tyrosine phosphatase receptor type N2

CNTNAP3

7

–

contactin associated protein like 3

NUTM2A-AS1

7

–

NUTM2A antisense RNA 1

RBFOX3

7

–

RNA binding fox-1 homolog 3

ESPNP

6

–

espin pseudogene

FOXK1

6

–

forkhead box K1

HOXA3

6

HP, TF

homeobox A3

LMF1

6

–

lipase maturation factor 1

USP45

6

–

ubiquitin specific peptidase 45

LOC101928782

6

–

RNA Gene affiliated with the lncRNA class

PRDM16

5

OG, TF, TCG

PR/SET domain 16

RGPD4

5

–

RANBP2 like and GRIP domain containing 4

MERTK

5

PK

MER proto-oncogene, tyrosine kinase

FAM160A1

5

–

family with sequence similarity 160 member A1

PRKAR1B

5

–

protein kinase cAMP-dependent type I regulatory subunit beta

MAD1L1

5

–

mitotic arrest deficient 1 like 1

HOXA2

5

HP, TF

homeobox A2

DPP6

5

–

dipeptidyl peptidase like 6

DIP2C

5

–

disco interacting protein 2 homolog C

FANK1

5

–

fibronectin type III and ankyrin repeat domains 1

GAL3ST3

5

–

galactose-3-O-sulfotransferase 3

FLJ12825

5

–

RNA Gene affiliated with the lncRNA class

KLF5

5

TF

Kruppel like factor 5

ISL2

5

HP, TF

ISL LIM homeobox 2

CBFA2T3

5

OG, TF, TCG

CBFA2/RUNX1 translocation partner 3

SBNO2

5

–

strawberry notch homolog 2

GIPR

5

–

gastric inhibitory polypeptide receptor

SCAF1

5

–

SR-related CTD associated factor 1

COL6A1

5

–

collagen type VI alpha 1 chain

NEXMIF

5

–

neurite extension and migration factor

GK5

5

–

glycerol kinase 5