Table 1 Information on datasets used in this study
Sl no | Dataset ID | Sample type | No. of Samples available | No. of Samples used | Platform | Normalization Method | Published literature |
|---|---|---|---|---|---|---|---|
1 | PC_NAN_SG1 (GSE140196) | Serum | 2 PC, 4 N | 2 PC, 2 N | [miRNA-4] Affymetrix Multispecies miRNA-4 Array | RMA-quantile | – |
2 | GSE59856 | Serum | 103 PC, 162 N | 100 PC, 150 N | 3D-Gene Human miRNA V20_1.0.0 | Quantile | Kojima M et al., 2015 PMID:25706130 |
3 | GSE85589 | Serum | 88 PC, 19 N | 80 PC, 18 N | [miRNA-4] Affymetrix Multispecies miRNA-4 Array | RMA-quantile | – |
4 | GSE24279 | Tissue | 136 PC, 22 N | 136 PC, 22 N | Febit human miRBase v11 | VSN | Bauer AS et al.,2012 PMID:22511932 |
5 | GSE32678 | Tissue | 25 PC, 7 N | 18 PC, 4 N | miRCURY LNA microRNA Array, v.11.0, multispecies | VSN | Donahue TR et al.,2012 PMID:22261810 |
6 | GSE41369 | Tissue | 9 PC, 9 N | 9 PC, 7 N | NanoString nCounter Human miRNA assay (v1) | Quantile | Frampton AE et al.,2104 PMID:24120476 |
7 | GSE43796 | Tissue | 6 PC, 5 N | 6 PC, 3 N | Agilent-031181 Unrestricted_Human_miRNA_V16.0 | Quantile | Park M et al.,2014 PMID:24072181 |
8 | E-MTAB-753 | Tissue | 17PC,17 N | 14PC,11 N | Affymetrix GeneChip miRNA 2.0 Array [miRNA-2_0] | RMA-quantile | Piepoli A et al.,2012 PMID:22479426 |