Fig. 1

3D t-SNE plots of transcript clusters from each of the 12 cancer-related pathways. For each pathway (Additional file 1: Table S1), two representative tumor types are shown. See Additional File 1: Table S3 in the Supplementary Appendix for the specific parameters used to generate each t-SNE cluster. Additional file 1: Figures S1-S12 show t-SNE profiles of additional relevant tumor types for each pathway. Axes here and in Additional file 1: Figures S1-S12 are unlabeled as t-SNE parameters are non-linear, dimensionless and not meaningfully interpretable (49)