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Table 5 Most frequent haplotypes in the TARGET and INOVA datasets

From: Genome sequencing analysis of blood cells identifies germline haplotypes strongly associated with drug resistance in osteosarcoma patients

   TARGET _NSNP TARGENHAP TARGET_CHR TARGET_BP1 TARGET_BP2 TARGET_Haplo TARGET_Region TARGET_Genes TARGET_F   INOVA_NSNP INOVA_NHAP INOVA_CHR INOVA_BP1 INOVA_BP2 INOVA_Haplo Inova_Region Inova_Genes Inova_F
Haplotype#1 Most frequent in Target 3 2 23 153,056,311 153,084,802 222 intronic, exonic IDH3G, PDZD4 0.699   5 5 23 153,073,319 153,075,655 22,222 intronic PDZD4 0.167
Haplotype#4 Most frequent in Target 8 5 22 18,878,593 18,879,911 22,222,122 intergenic DQ786190, DGCR6 0.506   8 8 22 18,877,869 18,878,859 22,122,121 intergenic DQ786190, DGCR6 0.106
Haplotype#12 Most frequent in Target 7 6 22 18,878,593 18,879,898 2,222,212 intergenic DQ786190, DGCR6 0.487   8 8 22 18,877,869 18,878,859 22,122,121 intergenic DQ786190, DGCR6 0.106
Haplotype#20 Most frequent in Target 8 4 22 18,878,349 18,878,632 11,222,221 intergenic DQ786190, DGCR6 0.478   8 8 22 18,877,869 18,878,859 22,122,121 intergenic DQ786190, DGCR6 0.106
Haplotype#31 Most frequent in Target 2 3 17 26,816,365 26,817,537 11 intronic, exonic SLC13A2 0.353   8 9 17 26,816,365 26,822,518 11,121,221 intronic, exonic SLC13A2 0.0839
Haplotype#32 Most frequent in Target 3 4 17 26,816,365 26,818,676 112 intronic, exonic SLC13A2 0.341   8 9 17 26,816,365 26,822,518 11,121,221 intronic, exonic SLC13A2 0.0839
Haplotype#61 Most frequent in Inova 3 6 19 55,614,923 55,624,113 111 intronic, exonic PPP1R12C 0.125   7 7 19 55,619,303 55,622,518 2,222,222 intronic PPP1R12C 0.71
Haplotype#74 Most frequent in Inova 3 6 19 55,614,923 55,624,113 111 intronic, exonic PPP1R12C 0.125   8 8 19 55,618,992 55,622,518 22,222,222 intronic PPP1R12C 0.675
Haplotype#126 Most frequent in Inova 5 16 5 67,513,481 67,554,172 11,121 intronic PIK3R1 0.0625   5 9 5 67,548,442 67,549,836 22,222 intronic PIK3R1 0.448
Haplotype#160 Most frequent in Inova 7 12 10 19,620,439 19,641,239 1,221,212 intergenic DQ600701, C10orf112 (MALRD1) 0.0409   7 9 10 19,621,103 19,624,121 2,222,221 intergenic DQ600701, C10orf112 (MALRD1) 0.267
  1. NSNP: Number of SNPs in the haplotype, NHAP: Number of common haplotypes, CHR: Chromosome, BP1: Position of left most SNP, BP2: Position of right most SNP, Haplo: Indicates the haplotype that was formed. The numbers 1 and 2 represent the genotypes. F: Sample frequency