From: Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers
CpG ID | Gene | ∆β methylation (tumor - normal) | Correlation (methylation-expression) | AUC | Overall Survival | |
---|---|---|---|---|---|---|
Top 7 | cg10244666 | WT1 | 0.44; p = 2.57e-40 | r:0.17; p = 1.09e-6 | 0,9430 (CI:0.9279–0.9582); p < 0.0001 | ns |
cg03441279 | BCL9 | −0.41; p = 5.8e-25 | r:-0.32; p = 1.58e-19 | 0,8434 (CI:0.8184–0.8684); p < 0.0001 | ns | |
cg25025181 | SMYD3 | −0.45; p = 6.18e-39 | r:-0.31; p = 2.36e-19 | 0,9324 (CI:0.9163–0.9486); p < 0.0001 | ns | |
cg01268824 | ZNF154 | 0.42; p = 4.68e-34 | r:-0.63; p = 1.44e-85 | 0,9002 (CI:0.8778–0.9226); p < 0.0001 | p = 0.0097 | |
cg09578475 | ZNF177 | 0.51; p = 4.87e-40 | r:0.20; p = 2.73e-8 | 0,9378 (CI:0.9219–0.9537); p < 0.0001 | ns | |
cg08065231 | 0.46; p = 9.51e-39 | r:0.23; p = 1.54e-10 | 0,9320 (CI:0.9153–0.9486); p < 0.0001 | ns | ||
cg13703871 | 0.47; p = 2.91e-40 | r:0.17; p = 3.13e-6 | 0,9410 (CI:0.9257–0.9562); p < 0.0001 | ns | ||
cg22674699 | HOXD9 | 0.40; p = 3.15e-28 | r:-0.17; p = 1.12e-6 | 0,8679 (CI:0.8427–0.8931); p < 0.0001 | p = 0.0381 | |
cg10119075 | ITIH5 | 0.41; p = 1.51e-39 | r:-0.26; p = 1.73e-13 | 0,9397 (CI:0.9243–0.9552); p < 0.0001 | ns | |
Bottom 7 | cg15165122 | ANKRD53 | 0.41; p = 2.09e-34 | r: −0.48; p = 2.34e-46 | 0,9028 (CI:0.8827–0.9229); p < 0.0001 | ns |
cg12743248 | EFCAB1 | −0.45; p = 5.39e-45 | r: 0.44; p = 8.49e-38 | 0,9664 (CI:0.9553–0.9775); p < 0.0001 | ns | |
cg12374721 | PRAC2 | 0.46; p = 9.42e-36 | r:0.39; p = 1.63e-30 | 0,9118 (CI:0.8923–0.9313); p < 0.0001 | p = 0.0134 | |
cg27170427 | RIMBP2 | −0.46; p = 1.24e-46 | r:0.35; p = 1.79e-24 | 0,9766 (CI:0.9680–0.9851); p < 0.0001 | ns | |
cg17192862 | −0.41; p = 1.29e-46 | r:0.45; p = 6.74e-40 | 0,9765 (CI:0.9675–0.9856); p < 0.0001 | ns | ||
cg10224098 | RNF220 | 0.45; p = 1.01e-39 | r:-0.09; p = 1.51e-2 | 0,9393 (CI:0.9220–0.9566); p < 0.0001 | ns | |
cg18081940 | TDRD10 | 0.41; p = 1.58e-39 | r:-0.20; p = 4.17e-8 | 0,9360 (CI:0.9189–0.9531); p < 0.0001 | p = 0.0037 | |
cg10216717 | TMEM132C | −0.45; p = 2.02e-49 | r:0.46; p = 3.44e-42 | 0,9920 (CI:0.9872–0.9968); p < 0.0001 | ns | |
cg04475027 | 0.42; p = 1.19e-40 | r:-0.23; p = 3.24e-11 | 0,9446 (CI:0.9289–0.9604); p < 0.0001 | p = 0.0291 |