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Table 1 Blood cancer cell lines carry nonproductive BCR/TCR in either both alleles or the only expressed allele

From: Profiling the B/T cell receptor repertoire of lymphocyte derived cell lines

 

Cell lines

Reads

Fraction %

V genes

D genes

J genes

CDR3 Sequences

B-ALL

NALM-19

425

36.08

IGHV1-3

IGHD6-6

IGHJ4

CARDRV*QL_PPPLRDYW

MHH-CALL-4

214

14.33

TRAV8-2

TRAJ8

CVVGL_QKLVF

163

10.92

IGHV2-26

IGHD2-21

IGHJ5

CARIRPRAVR_CGSP*GPDPW

KASUMI-2

3491

60.82

IGLV1-40

IGLJ3

CQSYD_AGVF

MUTZ-5

1632

76.30

IGLV2-34

IGLJ2

CSSYA_HLVVF

REH

100

16.21

IGHV3-15

IGHD3-10

IGHJ6

CTTGMVRGVI_YYYYGMDVW

RS4;11

361

26.05

IGHV6-1

IGHD1-20

IGHJ4

CAREP*LELFDYW

241

17.39

IGHV3-20

IGHD2-8

IGHJ5

CARD*SRY*W_VCYTDWFDPW

173

12.48

IGLV11-55

IGLJ7

CAMG_PQF

36

2.60

IGLV4-3

IGLJ3

CGESHTIDG_SRLRFWVF

NALM-6

15670

74.70

IGLV2-14

IGLJ7

CSSYTSS_ALGAVF

2479

11.82

IGLV4-3

IGLJ3

CGESHTIDGQ_RLQAPGGVF

2229

10.63

IGHV1-69

IGHD3-10

IGHJ6

CARDRRGEWPPSDYYYYYMDVW

T-ALL

KE-37

656

56.21

TRBV3-2

TRBD1

TRBJ1-5

CASSQDSGTG_RVGNQPQHF

ALL-SIL

2364

51.42

TRGV7

TRGJ1

CATWGSG_YYKKLF

909

19.77

TRBV18

TRBD1

TRBJ2-1

CASSPMEK_GHKGEQFF

482

10.49

TRBV7-9

TRBD1

TRBJ2-7

CASSLDT_WYEQYF

221

4.81

TRGV9

TRGJ1

CALWR*_YYKKLF

86

1.87

TRDV2

TRDJ1

CACDK_DKLIF

MOLT-3

2913

6.95

TRBV10-3

TRBJ2-5

CAISEPTG_SEETQYF

231

0.55

TRAV1-1

TRAJ33

CAVRDHPW_SNYQLIW

97

0.23

TRAV1-1

TRAJ24

CAVKMEQ_WGKLQF

B cell lymphoma unspecified

JM1

10946

48.32

IGLV3-1

IGLJ6

CQAWD_QPNVF

7877

34.78

IGLV3-10

IGLJ6

CYSTDSS_VIIANVF

1135

5.01

IGLV8-61

IGLJ7

CV_VF

HT

18074

89.54

IGKV3-11

IGKJ5

CQQRTNWPITF

1488

7.37

IGHV3-53

IGHD1-1

IGHJ4

CARASFAT_*LYFDSW

Blast phase CML

B-ALL#

BV-173

764

57.83

IGHV3-21

IGHD2-15

IGHJ3

CASQIL*WW*_PYRGAFDIW

157

11.88

IGKV2-29

IGKJ3

*MQGIH_SSLFTF

35

2.65

TRAV8-7

TRAJ19

CAGADRLQTGMRGAF

DLBCL

Toledo

11815

58.54

IGLV2-14

IGLJ7

CSSYTS_QHSVF

6830

33.84

IGLV3-21

IGLJ6

CQVWDSS_*SPNVF

316

1.57

IGLV8-61

IGLJ7

CV_VF

  1. Asterisks “*” indicate stop codon; underscores “_” indicate out of frame CDR3 translation
  2. # BV-173 is also been regarded as an B cell precursor ALL cell lines [47] despite its original establishment from a patient with blast phase CML [48] (https://www.dsmz.de/catalogues/details/culture/ACC-20.html)