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Table 2 Known cancer genes in the high-level copy number variation regions

From: Integrated genomic analysis identifies clinically relevant subtypes of renal clear cell carcinoma

  EC1 Known cancer related genes in Region EC2–3 Known cancer related genes in Region
High-level amplified events
 Cytoband 5q35 FGFR4/DOCK2 (9.09%) 5q35 FGFR4/DOCK2 (19.94%)
5q32 CD74/CSF1R (9.09%) 5q31 CTNNA1/NR3C1 (17.86%)
5q33 PDGFRB/ZNF300 (9.09%) 5q33 PDGFRB/ZNF300 (17.86%)
High-level deletion events
 Cytoband 9p21 CDKN2A/CDKN2B (11.11%) 3p25 PPARG/RAF1/VHL (15.18%)
9p23 PTPRD (7.07%) 3p21 PBRM1/SETD2/BAP1 (15.18%)
3p25 PPARG/RAF1/VHL (6.06%) 3p22 TGFBR2/MYD88 (14.58%)