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Table 5 Categorization of differentially expressed proteins according to Gene Ontology Biological Process

From: Proteomic characterization of paired non-malignant and malignant African-American prostate epithelial cell lines distinguishes them by structural proteins

Gene Ontology Biological Process Annotation (Number of Differentially Expressed Proteins)
Metabolic Process (37)
• eukaryotic translation initiation factor 4B • double-stranded RNA-specific adenosine deaminase • plasminogen activator inhibitor 1 RNA-binding protein
• serotransferrin • 60S ribosomal protein L6 • nucleolar RNA helicase 2
• proteasome activator complex subunit 3 • non-histone chromosomal protein HMG-14 • cytosolic acyl coenzyme A thioester hydrolase
• phosphoenolpyruvate carboxykinase • non-histone chromosomal protein HMG-17 • cytochrome c oxidase subunit 5A
• prothymosin alpha • 40S ribosomal protein S11 • 40S ribosomal protein S24
• high mobility group protein HMG-I/HMG-Y • gamma-interferon-inducible protein 16 • T-complex protein 1 subunit epsilon
• RNA-binding protein EWS • PDZ and LIM domain protein 1 • high mobility group protein HMGI-C
• calpastatin • 60S ribosomal protein L35 • aminopeptidase N
• creatine kinase U-type • myosin heavy chain-9 • 60S ribosomal protein L10
• S-formylglutathione hydrolase • hepatoma-derived growth factor • phosphoserine aminotransferase
• thioredoxin domain-containing protein 17 • S-methyl-5′-thioadenosine phosphorylase • hydroxyacyl-coenzyme A dehydrogenase
• adenosylhomocysteinase • prefoldin subunit 2 • caveolin-1
• putative pre-mRNA- splicing factor ATP-dependent RNA helicase DHX15   
Cellular Process Proteins (23)
• PDZ and LIM domain protein 1 • type I cytoskeletal keratin 19 • non-histone chromosomal protein HMG-17
• lamin-B1 • integrin beta-1 • CD166 antigen
• non-histone chromosomal protein HMG-14 • double-stranded RNA-specific adenosine deaminase • high mobility group protein HMG-I/HMG-Y
• myosin heavy chain-9 • 40S ribosomal protein S11 • caveolin-1
• vimentin • 40S ribosomal protein S24 • filamin-A
• high mobility group protein HMGI-C • type II cytoskeletal keratin 8 • hepatoma-derived growth factor
• CD59 glycoprotein • alpha-actinin-1 • 14–3-3 protein sigma
• adenosylhomocysteinase • putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15