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Fig. 5 | BMC Cancer

Fig. 5

From: Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue

Fig. 5

Differential transcripts are enriched for longer transcripts in FFPE compared to FF samples. a Boxplot shows transcript length (log10 bp) distribution for all protein-coding transcripts (n = 16,630), non-differential transcripts (n = 4450), transcripts enriched in FF (n = 2338) or FFPE (n = 2112). b Beeswarm boxplot shows the distribution of length for individual protein coding transcripts enriched in FF or FFPE. Line graphs show c TTN and d SYNE1 exon level expression (count) along the transcript for in paired FF and FFPE samples

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BMC Cancer

ISSN: 1471-2407

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