SNP | Gene | Chromosome | Chromosome Positiona | Distance from gene start | Gene position | Function | MAFb |
---|
rs1800682 | FAS | 10 | 90749963 | 325c | 5′ upstream | regulatory | C (0.403) |
rs2290907 | TNRC6Cd | 17 | 76093677 | 93483e | Intron 18–19 | No-coding | G (0.115) |
rs16970849 | TMC8 | 17 | 76133908 | 8403f | Intron 11–12 | No-coding | A (0.049) |
- aChromosome positions of each SNP based on dbSNP human build 138 and human genome build 37.5
- bMAF: minor allele frequency based on HapMap data in CEU population
- cDistance from FAS gene start (90750288)-forward strand
- dTNRC6C: trinucleotide repeat containing 6C gene (4 kb distance from TMC6)
- eDistance from TNRC6Cgene start (76000194)-forward strand (15.3 kb distant from TMC6 gene start)
- fDistance fromTMC8 gene start (76125505)-forward strand