Table 5 Genotype distribution in samples cross-reacting to low-risk genotypes
Genotype | Phylogenetic clade | High-risk genotypes in the same phylogenetic clade | HC2 | cobas | APTIMA | |||
|---|---|---|---|---|---|---|---|---|
Single infections (%) | Multiple infections (%) | Single infections (%) | Multiple infections (%) | Single infections (%) | Multiple infections (%) | |||
6 | α10 | None | 2 (2.5 %) | 5 (6.6 %) | 3 (6.4 %) | 4 (12.1 %) | 0 (0.0 %) | 2 (7.4 %) |
11 | α10 | None | 0 (0.0 %) | 0 (0.0 %) | 1 (2.1 %) | 0 (0.0 %) | 0 (0.0 %) | 0 (0.0 %) |
26 | α5 | 51 | 0 (0.0 %) | 0 (0.0 %) | 1 (2.1 %) | 0 (0.0 %) | 0 (0.0 %) | 0 (0.0 %) |
42 | α1 | None | 5 (6.3 %) | 3 (3.9 %) | 4 (8.5 %) | 0 (0.0 %) | 2 (8.0 %) | 2 (7.4 %) |
44 | α10 | None | 0 (0.0 %) | 3 (3.9 %) | 0 (0.0 %) | 2 (6.1 %) | 0 (0.0 %) | 0 (0.0 %) |
53 | α6 | 56 | 14 (17.7 %) | 10 (13.2 %) | 4 (8.5 %) | 4 (12.1 %) | 0 (0.0 %) | 2 (7.4 %) |
54 | α13 | None | 2 (2.5 %) | 2 (2.6 %) | 2 (4.3 %) | 2 (6.1 %) | 0 (0.0 %) | 1 (3.7 %) |
61 | α3 | None | 2 (2.5 %) | 7 (9.2 %) | 7 (14.9 %) | 4 (12.1 %) | 3 (12.0 %) | 1 (3.7 %) |
62 | α3 | None | 2 (2.5 %) | 5 (6.6 %) | 4 (8.5 %) | 2 (6.1 %) | 4 (16.0 %) | 3 (11.1 %) |
66 | α6 | 56 | 16 (20.3 %) | 8 (10.5 %) | Not relevant | Not relevant | Not relevant | Not relevant |
70 | α7 | 18, 39, 45, 59, 68 | 15 (19.0 %) | 8 (10.5 %) | 9 (19.1 %) | 3 (9.1 %) | 9 (36.0 %) | 4 (14.8 %) |
71 | α15 | None | 0 (0.0 %) | 1 (1.3 %) | 0 (0.0 %) | 0 (0.0 %) | 0 (0.0 %) | 1 (3.7 %) |
72 | α3 | None | 0 (0.0 %) | 1 (1.3 %) | 0 (0.0 %) | 1 (3.0 %) | 0 (0.0 %) | 1 (3.7 %) |
73 | α11 | None | 1 (1.3 %) | 2 (2.6 %) | 0 (0.0 %) | 0 (0.0 %) | 0 (0.0 %) | 1 (3.7 %) |
81 | α3 | None | 3 (3.8 %) | 4 (5.3 %) | 3 (6.4 %) | 2 (6.1 %) | 1 (4.0 %) | 2 (7.4 %) |
82 | α5 | 51 | 11 (13.9 %) | 5 (6.6 %) | 3 (6.4 %) | 2 (6.1 %) | 3 (12.0 %) | 2 (7.4 %) |
83 | α3 | None | 2 (2.5 %) | 7 (9.2 %) | 3 (6.4 %) | 3 (9.1 %) | 3 (12.0 %) | 2 (7.4 %) |
84 | α3 | None | 4 (5.1 %) | 5 (6.6 %) | 3 (6.4 %) | 4 (12.1 %) | 0 (0.0 %) | 3 (11.1 %) |
# Genotypes | – | – | 79 (100 %) | 76 (100 %) | 47 (100 %) | 33 (100 %) | 25 (100 %) | 27 (100 %) |
# Samples | – | – | 79 | 30 | 47 | 15 | 25 | 10 |