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Table 3 Comparison of 2188- and 101-gene centroid classifiers in the GSE41998 TNBC cohort [26]

From: Generation of an algorithm based on minimal gene sets to clinically subtype triple negative breast cancer patients

    TNBCtype (2188 gene centroid model)
    BL1 BL2 LAR M MSL Unclassified
101-gene centroid model (A) All significantly classed cases BL1 36    1 1  
BL2 5 12   2 2  
LAR   1 10   1 1
M 3 1   25 2  
MSL     3 21  
Unclassified 1   1 1 1 1
(B) Ambiguous cases unclassified BL1 26      
BL2 5 11   1 2  
LAR   1 9    1
M   1   15 1  
MSL     1 11  
Unclassified 14 1 2 15 14 1
  1. In panel A, all cases are used. In Panel B, ambiguous cases—cases that showed an insignificant difference (via a Z-test) between subclasses—are placed in the unclassified group