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Table 3 Comparison of 2188- and 101-gene centroid classifiers in the GSE41998 TNBC cohort [26]

From: Generation of an algorithm based on minimal gene sets to clinically subtype triple negative breast cancer patients

   

TNBCtype (2188 gene centroid model)

   

BL1

BL2

LAR

M

MSL

Unclassified

101-gene centroid model

(A) All significantly classed cases

BL1

36

  

1

1

 

BL2

5

12

 

2

2

 

LAR

 

1

10

 

1

1

M

3

1

 

25

2

 

MSL

   

3

21

 

Unclassified

1

 

1

1

1

1

(B) Ambiguous cases unclassified

BL1

26

     

BL2

5

11

 

1

2

 

LAR

 

1

9

  

1

M

 

1

 

15

1

 

MSL

   

1

11

 

Unclassified

14

1

2

15

14

1

  1. In panel A, all cases are used. In Panel B, ambiguous cases—cases that showed an insignificant difference (via a Z-test) between subclasses—are placed in the unclassified group
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BMC Cancer

ISSN: 1471-2407

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