Summary of LOH detected with each SNP markers | |||||||||
---|---|---|---|---|---|---|---|---|---|
SNP-Markers | rs22 76930 | rs37 33414 | rs45 5600 | rs21 3090 | rs45 0320 | rs76 63350 | rs11 93110 | rs12 98865 | |
Informative samples | Grade II | 0/20 (0%) | 15/20 (75%) | 7/20 (35%) | 9/20 (45%) | 12/20 (60%) | 7/20 (35%) | 2/20 (10%) | 0/20 (0%) |
 | Grade IV | 0/20 (0%) | 8/20 (40%) | 6/20 (30%) | 6/20 (30%) | 10/20 (50%) | 0/20 (0%) | 2/20 (10%) | 1/20 (5%) |
LOH per informative samples | Grade II | 0/20 (0%) | 2/15 (13.33%) | 2/7 (28.57%) | 3/9 (33.33%) | 4/12 (33.33%) | 0/7 (0%) | 0/2 (0%) | 0/0 (0%) |
 | Grade IV | 0/20 (0%) | 3/8 (37.5%) | 2/6 (33.33%) | 3/6 (50%) | 5/10 (50%) | 0/0 (0%) | 1/2 (50%) | 1/1 (100%) |
Total LOH (Grade II & IV) | 0/20 (0%) | 5/23 21.73% | 4/13 30.73% | 6/15 40% | 9/22 40.90% | 0/7 (0%) | 1/4 25% | 1/1 100% | |
LOH per informative samples | |||||||||
Samples | Grade II (N = 20) | Grade IV (N = 20) | Grade II&IV (N = 40) | ||||||
Overall SNP LOH per informative samples | 8/19* (42.10%) | 11/19* (57.89%) | 19/38 (50%) |