From: Rapid detection of SMARCB1 sequence variation using high resolution melting
Exon | Primer | Amplicon size bp | Annealing temperature |
---|---|---|---|
5' Exon 1-1 | INI1F actgagggcggcctggtcgt Snf1Rb ccgaaggtcttgctcagcgc | 222 | 65°C |
3' Exon 1-2 | Snf1Fb ctctgccgccgcaatgatgatg INI1R cgacacgcccactaggccac | 261 | 64°C |
Exon 2 | INI12F ctgcgacccttataatgagc INI12R gcgagtggttttgaaacagg | 213 | 58°C |
Exon 3 | INI13F accagcagagtgacccagtg INI13R agagatgccctggccaggaa | 195 | 60°C |
Exon 4 | INI14F tcgagcctgacagaggtacagtg INI14R gaatcagcacggagggtgagt | 284 | 60°C |
Exon 5 | INI15F ttgcatacctagggctccgg INI15R cacgtaacacacaggggttg | 238 | 60°C |
Exon 6 | INI16F tggtgcaatctcttggcatc INI16R tcagtgctccatgatgacac | 277 | 60°C |
Exon 7 | INI17F tgggctgcaaaagctctaac INI17R cgctcacacagagaagtctt | 312 | 60°C |
Exon 8 | INI18F atccactgggtgccagcagt INI18R tctgcctggaaagccaggtg | 313 | 60°C |
Exon 9 | INI19F ccctgtagagccttgggaag INI19R gcctctgtccttgccagaag | 200 | 60°C |