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Table 3 The genes used in Real-time RT-PCR.

From: Gene expression variation to predict 10-year survival in lymph-node-negative breast cancer

Genes from the 51 gene list

Gene Symbol

Acc. number

validated

CCNB1IP1

NM_182849

yes

E2F2

NM_004091

yes

GGH

NM_003878

yes

GIT2

NM_014776

yes

SERPINB9

NM_004155

yes

TMEM63A

NM_014698

yes

ZNF497

NM_198458

no

ZNF691

NM_015911

no

Genes from the 94 gene list

Gene Symbol

Acc. number

validated

AKR1B1

NM_001628

yes

EGLN1

NM_022051

yes

HAX1

NM_006118

no

LGMN

NM_005606

yes

SHC1

NM_003029

no

TFAP2A

NM_003220

yes

Reference genes

Gene Symbol

Acc. number

 

PPIA

NM_203431

 

PTER

NM_001001484

 
  1. Eight genes from the list of 51 genes (p < 0.001 and 80% presence) were selected together with six genes from the list with 94 genes (p < 0.01 and 100% presence), where p-values were below the significance level for the difference in average expression between 10 year survivors and deceased patients. Two genes were selected as reference genes since they had homogenous expression throughout the expression array analysis. The table also shows in which genes differences in expression between the two survival groups were validated using RT-PCR.