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Table 7 Manual and automated hybridization of FFPE tumors

From: Automated array-CGH optimized for archival formalin-fixed, paraffin-embedded tumor material

Sample

Hyb method

Variance

StDev

DR

Correlation

FFPE tumor 3

manual

0.11

0.06

2.0

0.82

FFPE tumor 3

automated

0.10

0.04

1.9

 

FFPE tumor 4

manual

0.10

0.05

1.4

0.72

FFPE tumor 4

automated

0.08

0.03

1.3

 

FFPE tumor 5

manual

0.10

0.04

1.5

0.85

FFPE tumor 5

automated

0.08

0.02

1.3

 

FFPE tumor 6

manual

0.13

0.06

1.9

0.84

FFPE tumor 6

automated

0.08

0.04

1.9

 
  1. Variance (Variance), standard deviation (StDev), dynamic range (DR) and Pearson correlation (Correlation) of four FFPE tumors hybridized with our manual and our automated method (Hyb method).
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BMC Cancer

ISSN: 1471-2407

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