Table 1 Library statistics.
From: Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes
Library | #Total PETs | #uPETs | #Mappable (% over uPETs) | # PET1 | #Known gene-asso. PET1 (% over PET1) | #Pathway-asso. PET1 (% over PET1) (% over known gene-asso. PET1) |
|---|---|---|---|---|---|---|
B16F1 melanoma (SMT001) | 91977 | 45465 | 34146 (75.1%) | 32267 | 29439 (91.2%) | 11687 (36.2%) (39.7%) |
Melan-a2 melanocyte (SMN001) | 68880 | 51352 | 38640 (75.3%) | 36623 | 33005 (90.1%) | 13348 (36.4%) (40.4%) |
E14 Stem Cell (MoEScom) | 248234 | 135328 | 97295 (71.9%) | 93384 | 86019 (92.1%) | 28311 (30.3%) (32.9%) |
E17.5 embryo (SME006) | 81793 | 41595 | 30883 74.3% | 28387 | 24656 (86.9%) | 9314 (32.8%) (37.8%) |