Table 3 BAC clones and chromosomal location with significant differences in frequency of gain between patients in the Recurrence and Non-recurrence groups
BAC clone | Chromosome location | Representative genes | No. of gains in the Recurrence group | No. of gains in the Non-recurrence group | Adjusted p value |
|---|---|---|---|---|---|
BAC217_O23 | 8q21.13 | IL7 | 8 | 6 | 0.005 |
BAC178_P02 | 8q21.13 | Â | 8 | 6 | 0.005 |
BAC232_P18 | 19p13.12 | CHERP, SLC35E1, CRSP7 | 0 | 10 | 0.007 |
BAC246_J06 | 19p13.11 | MAST3, PIK3R2, IFI30, RAB3A | 0 | 10 | 0.007 |
BAC192_L06 | 19p13.11 | FKBP8, UBA52, CRLF1 | 0 | 10 | 0.007 |
BAC195_K16 | 19p13.11 | ZNF253, ZNF505 | 0 | 10 | 0.007 |
BAC144_L05 | 19q12 | Â | 0 | 10 | 0.007 |
BAC90_H02 | 19q13.12 | FXYD5, LISCH7, USF2, HAMP | 0 | 10 | 0.007 |
BAC162_E14 | 19q13.13 | HKR1, ZNF527, ZNF569 | 0 | 10 | 0.007 |
BAC162_K04 | 19q13.2 | PD2, IXL, ZFP36, RPS16, SUPT5H | 0 | 10 | 0.007 |
BAC146_F01 | 19q13.2 | MAP3K10, AKT2 | 0 | 10 | 0.007 |
BAC162_J04 | 19q13.2 | SNRPA, MIA, RAB4B, EGLN2, CYP2T2P, CYP2F1P | 0 | 10 | 0.007 |
BAC249_F13 | 19q13.2 | CYP2S1, AXL, HNRPUL1 | 0 | 10 | 0.007 |
BAC239_N12 | 19q13.31 | XRCC1, ZNF576, IGSF4C, PLAUR | 0 | 10 | 0.007 |
BAC183_D06 | 19q13.31 | PLAUR, R30953_1, KCNN4 | 0 | 10 | 0.007 |
BAC78_D10 | 19q13.31 | PLAUR, R30953_1 | 0 | 10 | 0.007 |
BAC233_C05 | 19q13.32 | FOSB, RTN2, VASP, OPA3 | 0 | 10 | 0.007 |
BAC130_J22 | 19q13.41 | KLK1, KLK15, KLK3, KLK2 | 0 | 10 | 0.007 |
BAC53_O15 | 19q13.42 | NALP12 | 0 | 10 | 0.007 |
BAC168_E17 | 19q13.42 | Â | 0 | 10 | 0.007 |
BAC8_P07 | 5q13.1 | Â | 3 | 0 | 0.008 |
BAC12_H03 | 5q14.3 | RASA1 | 3 | 0 | 0.008 |
BAC237_N24 | 5q15 | Â | 3 | 0 | 0.008 |
BAC13_G12 | 5q15 | Â | 3 | 0 | 0.008 |
BAC147_D19 | 5q15 | Â | 3 | 0 | 0.008 |
BAC185_O16 | 5q11.2 | Â | 3 | 0 | 0.008 |
BAC171_A01 | 5q11.2 | Â | 3 | 0 | 0.008 |
BAC135_P04 | 5q11.2 | Â | 3 | 0 | 0.008 |
BAC144_P08 | 5q12.1 | DEPDC1B | 3 | 0 | 0.008 |
BAC140_C04 | 5q12.3 | SDCCAG10 | 3 | 0 | 0.008 |
BAC166_A05 | 5q13.2 | RAD17, MARVELD2 | 3 | 0 | 0.008 |
BAC154_I09 | 5q13.2 | FCHO2 | 3 | 0 | 0.008 |
BAC119_I19 | 5q13.3 | ANKRD31 | 3 | 0 | 0.008 |
BAC96_B13 | 5q13.3 | PDE8B, WDR41 | 3 | 0 | 0.008 |
BAC12_E06 | 5q14.2 | RPS23 | 3 | 0 | 0.008 |
BAC25_M19 | 5q14.3 | Â | 3 | 0 | 0.008 |
BAC152_G16 | 8q12.1 | Â | 7 | 5 | 0.01 |
BAC139_M03 | 8q24.22 | SIAT4A | 8 | 7 | 0.01 |
BAC90_C04 | 8q24.22 | Â | 8 | 7 | 0.01 |
BAC76_N02 | 8q24.23-24.3 | COL22A1 | 8 | 7 | 0.01 |
BAC145_H17 | 8q11.21 | Â | 7 | 5 | 0.01 |