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Table 1 Summary of 20 genes examined by methylation analysis

From: The 5'-end transitional CpGs between the CpG islands and retroelements are hypomethylated in association with loss of heterozygosity in gastric cancers

Gene symbol Synonym Gene description Accession no.
CpG islands
   CDH1 E-CADHERIN Cadherin 1, type 1, E-cadherin (epithelial) NM_004360
   RABGEF1 AJ250042 RAB guanine nucleotide exchange factor (GEF) 1 NM_014504
   STAG1 SA1 Stromal antigen 1 NM_005862
   MYBPC2 AJ250042 Myosin binding protein C, fast type NM_004533
   VDR J03258 Vitamin D (1,25- dihydroxyvitamin D3) receptor NM_000376
   ESR2 AF051428 Estrogen receptor 2 (ER beta) NM_001437
   MLH1 HMLH1 MutL homolog 1, colon cancer, nonpolyposis type 2 NM_000249
   FLJ43855 AK125843 similar to sodium- and chloride-dependent creatine transporter NM_198857
   PTEN BZS Phosphatase and tensin homolog NM_000314
   CDKN2A P16 Cyclin-dependent kinase inhibitor 2A NM_000077
   PAX5 AY463952 Paired box gene 5 (B-cell lineage specific activator) NM_016734
   RUNX2 CBFA1 Runt-related transcription factor 2 NM_004348
   RUNX3 CBFA3 Runt-related transcription factor 3 NM_004350
   KIAA1752   Homo sapiens mRNA for KIAA1752 protein AB051539*
   MUC8   Mucin 8, tracheobronchial U14383*
Non-island CpGs
   MAGEA2 MAGE-A2 Melanoma antigen family A, 2 NM_005361
   DDX53 CAGE DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 NM_182699
   TFF2 SML1 Trefoil factor 2 (spasmolytic protein 1) NM_005423
   SERPINB5 MASPIN Serpin peptidase inhibitor, clade B (ovalbumin), member 5 NM_002639
   MSLN MPF Mesothelin isoform 2 precursor NM_013404
  1. *GenBank accession number.