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Table 2 Haplotypes with frequency>0.01, LD group characterization and tSNPs selected using Utah genotyping data*

From: Characterization of the linkage disequilibrium structure and identification of tagging-SNPs in five DNA repair genes

a. ATM                      
A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 A11 A12 A13 A14 Freq        
1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.54        
2 2 2 2 2 2 2 2 2 2 2 2 2 2 0.42        
2 2 2 2 2 2 1 2 2 2 2 2 2 2 0.01        
2 2 2 1 2 2 1 2 2 2 1 2 2 2 0.01        
1 1 1 1 1 1 1 1 1 1 2 1 1 1 0.01        
LD Group and tSNP Designation
1 1 1 1 1 1 1 1 1 1 1 1 1† 1         
b. MRE11A                      
M1 M2 M3 M4 M5 M6 M7 M8 M9 M10 M11 Freq           
2 2 2 1 2 2 1 1 1 1 1 0.30           
1 1 1 2 1 1 1 2 1 1 1 0.28           
1 1 1 1 1 1 1 1 1 1 1 0.25           
1 1 1 2 1 1 1 1 1 1 2 0.09           
1 1 1 1 1 1 1 2 1 1 1 0.06           
1 1 1 2 1 1 2 1 2 2 1 0.01           
LD Group and tSNP Designation
1 1 1 4† 1 1† 2 4 2 2† 3†            
c. XRCC4                      
X1 X2 X3 X4 X5 X6 X7 X8 X9 X10 X11 X12 X13 X14 X15 X16 X17 X18 X19 X20 X21 Freq
2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 1 1 1 0.35
1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0.19
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.11
1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 2 2 1 1 1 0.10
1 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 1 1 1 0.05
1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 2 2 0.03
1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 0.02
2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 2 2 2 0.02
2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.02
2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 1 0.02
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 0.02
1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 1 1 0.01
  1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 2 1 1 1 0.01
LD Group and tSNP Designation
1 1† 1 1 1 1 1 1 4† 1 1 1 1 2† 4 2 2 2 3 3 3†  
  1. * Analysis considers the total panel of 94 individuals together
  2. † tSNP selected / group