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Table 7 Endothelial markers expressed in normal and tumour endothelial cells (ECs) and in KS. For comparison tag numbers for each group were normalized to 100,000 transcripts. Endothelial markers were derived from [22]. Tumour endothelial markers derived from colon cancer endothelium are shown in bold.

From: Gene expression profile of AIDS-related Kaposi's sarcoma

Tag ID Normal ECs Tumour ECs KS
CATATCATTAA Angiomodulin 247 501 120
TGCACTTCAAG Hevin 328 141 90
TTTGCACCTTT Connective tissue growth factor 165 84 41
TTGCTGACTTT Collagen, type VI α1 73 131 101
ACCATTGGATT Interferon induced transmembrane protein 102 67 19
ACACTTCTTTC Guanine nucleotide binding protein 11 104 44 35
TTCTGCTCTTG Von Willebrand factor 71 67 49
TCCCTGGCAGA Cysteine-rich protein 2 (CRP-2, ESP-1) 66 68 8
TAATCCTCAAG Collagen, type XVIII α 26 106 26
ATGTCTTTTCT Insulin-like growth factor-binding protein 4 58 65 19
GGGATTAAAGC CD146 endothelial marker 40 67 0
TTAGTGTCGTA SPARC (osteonectin, BM-40 38 69 22
TTCTCCCAAAT Collagen, type IV α2 20 86 9
GTGCTAAGCGG Collagen, type VI α2 24 74 9
GTTTATGGATA Matrix Gla protein (MGP) 35 56 22
CCCTGTTCAGC TIE-1 14 15 13
CCCTTGTCCGA PEM1 EST 131 104 11
CCCTTTCACAC PEM2 EST 52 33 3
CAACAATAATA PEM3 EST 42 25 4
GGCCCTACAGT PEM4 EST 26 13 5
GCTAACCCCTG PEM5 EST 7 31 9
GGCACTCCTGT PEM6 EST 22 13 4
TCACAGCCCCC PEM7 EST 20 15 8
TTTCATCCACT PEM8 EST 20 13 3
ATACTATAATT PEM9 EST 25 6 0
AATAGGGGAAA PEM10 EST 13 19 3
GGAAATGTCAA MMP-2 (gelatinase A, 72-kD type IV collagenase) 1 31 52
TTTGGTTTTCC Collagen, type I α2, transcript A 5 139 110
ATTTTGTATGA Nidogen (entactin) 0 13 6
ACTTTAGATGG Collagen, type VI α3 1 23 66
GAGTGAGACCC Thy-1 cell surface antigen 3 63 33
TTAAATAGCAC Collagen, type I α1 2 33 2
GTTCCACAGAA Collagen, type I α2, transcript B 0 9 19
TCCCCCAGGAG Bone morphogenetic protein 1 (metalloprotease) 1 164 0
CTTTCTTTGAG Regulated in glioma-like 7–1 0 22 1
CAGGAGACCCC MMP-11 (stromelysin 3) 0 16 1
GTACACACACC Cystatin S 0 10 0
CCACAGGGGAT Collagen, type III α1 2 38 182
GGGGCTGCCCA TEM1, similarity to thrombomodulin 0 28 26
GATCTCCGTGT TEM2, similarity to rat Rhes ras-related protein 0 25 0
CATTTTTATCT TEM3, ESTs 0 23 1
TATTAACTCTC TEM4, similarity to JNK interacting protein-3a 0 21 2
TTTTTAAGAAC TEM5, ESTs 0 14 0
TTAAAAGTCAC TEM6, ESTs 1 19 1
ACAGACTGTTA TEM7, similarity with sea squirt nidogen 4 74 2
CTATAGGAGAC TEM8, similarity with homeobox protein DLX-3 1 18 8
GCCCTTTCTCT TEM9, Endo 180 lectin (macrophage mannose receptor family) 1 17 13