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Table 6 Tags overexpressed in normal skin compared with KS. For comparison tag numbers for each group were normalized to 50,000 transcripts

From: Gene expression profile of AIDS-related Kaposi's sarcoma

No. Tag ID KS NS
1 AGAAAGATGT Annexin A1 2 18
2 AAGGCAATTT Vascular Rab-GAP/TBC-containing/Homo sapiens cDNA FLJ11739 fis, clone HEMBA1005497 2 14
3 GCTGCCCTGG Centaurin, gamma 3/CDP-diacylglycerol – inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 2 14
4 TGCGCCTTTA No reliable matches 2 13
5 ACATTTCAAA Keratin 1 11 77
6 GCCCCTGCTG Keratin 5 82 219
7 GAAAACAAAG Keratin 10 14 122
8 GCAAAACTCC Carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)/ Homo sapiens cDNA FLJ13686 fis, clone PLACE2000047 2 16
9 AATAAATTCC Neuroblastoma, suppression of tumorigenicity 1 3 25
10 GGGAAACCCC Dipeptidylpeptidase 9/ Homo sapiens cDNA: FLJ21289 fis, clone COL01938 4 33
11 AGATGAGATG Core promoter element binding protein 3 24
12 CCTCTGCACT DnaJ protein SB73/ ESTs, Weakly similar to A46010 X-linked retinopathy protein (C-terminal, clone XEH.8c) 3 24
13 AAAGTCTAGA Cyclin D1 2 15
14 CAAAAAAAAA Multiple (n = 26) 2 15
15 TCACCCAGGG No reliable matches 2 14
16 GGCCCCTCAC Insulin-like growth factor binding protein 6/ zinc finger protein 262 4 25
17 AGAATCGCTT Coatomer protein complex, subunit alpha/ expressed in activated T/LAK lymphocytes 7 49
18 ATTTGAGAAG RAD23 homolog B (S. cerevisiae) 7 49
19 TCTAACAACG No reliable matches* 0 94
20 AATTTGCAAA Homo sapiens cDNA FLJ13582 fis, clone PLACE1009048 0 44
21 TCTCCATACC No reliable matches 0 42
22 CCCATCGCCT No reliable matches 0 33
23 CCCATCGGCC No reliable matches* 0 18
24 CCACGGGATT Collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) 0 15
25 GCTTTCTCAC No reliable matches 0 14
26 TCACCGGCAG Tag not found in any mRNA sequence, tag not seen in any public SAGE library* 0 14
27 ACCCCGGGAG No reliable matches* 0 11
28 TTAAAAAAAA Hypothetical protein PRO2521/ matrin 3 0 10
  1. * Low frequency of appearance in public SAGE libraries