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Table 5 Tags most significantly overexpressed in KS compared with normal skin. For comparison tag numbers for each group were normalized to 50,000

From: Gene expression profile of AIDS-related Kaposi's sarcoma

No. Tag ID KS NS
1 GACCGCAGGA Collagen, type IV, α1 (basement membrane collagen) 117 1
2 GTGCGCTGAG MHC, class I C 93 1
3 CGTGGGTGGG Heme oxygenase (decyling) 1 171 5
4 CTCTAAGAAG Complement component 1q subcomponent α peptide 40 1
5 GAGAGTGTCT Tissue inhibitor of metalloproteinase (TIMP) 31 1
6 GCGGTTGTGG Lysosomal-associated multispanning membrane protein 5 28 1
7 CGGGGTGGCC Cartilage oligomeric matrix protein 28 0
8 GCAAGAAAGT Hemoglobin β 24 0
9 ACCGCCGTGG Cytochrome b-245, α polypeptide 22 1
10 CCGGGTGATG ATX1 (antioxidant protein1) 22 1
11 GCTGCGGTCC H2A histone family member 19 1
12 GTGTTAACCA Ribosomal protein L15 19 1
13 ACCATTCTGC Interferon induced transmembrane protein 2 (1-8D) 19 1
14 GGCTCCCACT Heat shock 90 kD protein1, beta 18 0
15 CGGGATTCCT Phospholipid transfer protein 18 1
16 GCTGGTGCCT Thy-1 cell surface antigen 17 1
17 TACAGTATGT Glutamate-ammonia ligase, glutamine synthase 17 1
18 GAGCAGCGCC S100 calcium binding protein A7 (Psoriasin)* 101 8
19 ACTTTAGATG Collagen type VI α3 33 3
20 GTGGCCACGG S100 calcium binding protein A9 (Calgranulin B) 96 8
21 GCCCCTCCGG 16,7 Kd protein (function unknown) 16 1
22 AGTAGCCGTG No reliable matches 16 1
23 ACAGGGTGAC Endothelial differentiation-related factor 1 15 1
24 TGGAGAAGAG Thioredoxin interacting protein 15 1
25 TGTCATCACA Lysyl oxidase-like 2 (senescence and cell adhesion) 15 1
26 CTGTTAGTGT Malate dehydrogenase 1, NAD (soluble) 15 1
27 TCACCTTAGG Integral membrane protein 2β 15 0
28 ACAAGTACTG Cadherin 5 type 2, VE-cadherin * (expressed specially in endothelial cells) 15 0
29 GATCAATCAG Small inducible cytokine subfamily A member 18* 14 0
30 CAGCTGTCCC Keratin 16 (expressed by hyperproliferative cells) * 12 0
31 GGCTGGTCTG Hypothetical protein MGC4677 28 3
32 ATCTTGTTAC Fibronectin (involved in cell adhesion and migration) 13 1
33 GCCGGGTGGG Basigin (Ok blood group) 13 1
34 TCGTAACGAG Hypothetical protein FLJI4987 13 1
35 TGGGTGAGCC Cathepsin B (lysosomal cys protease) 78 8
36 TGCATCTGGT Heat shock 70 KD protein 5 39 4
37 GTGCTGGACC Proteasome activator subunit 2 13 1
38 GATCAGGCCA Collagen, type III, α1 (blood vessel collagen) 105 11
39 CTGGGTGCCT Immunoglobulin heavy constant gamma 3 (G3 m Marker) 37 4
40 CCAGTGGCCC Ribosomal protein S9 46 5
41 CTAGCCTCAC Actin, gamma 1 25 3
42 CTCATAGCAG Tumor protein, translationally controlled 1 24 3
43 GCGGGGTACC pM5 protein 23 3
44 CTCCCCCAAG Homosapiens SNC73 protein 23 3
45 TCAGACGCAG Prothymosin α 56 6
46 ACCTGTATCC Interferon induced transmembrane protein 3 (1-8U) 90 10
47 ACATAGACCG Serine (or cysteine) proteinase inhibitor clade F, member 1 12 1
48 GCACAACAAG Uncharacterized hypothalamus protein HTMP 12 1
49 TGCTGCCTGT Bone marrow stromal cell antigen 21 22 3
50 CATCACGGAT Interleukin 1 receptor, type 1 * 22 3
51 ATTTAGCAAG Fatty acid binding protein 4, adipocyte * 33 4
52 TCCCCGTACC Lamin A/C 11 1
53 ACAAGGTGCC No reliable matches 11 1
54 CTTGACATAC Dual specificity phosphatase 1* 11 1
55 CCCGGGAGCG PDZ and LIM domain1 (elfin) * 11 1
56 TAGCTGCTGG Splicing factor, arginine/serine-rich 11 * 11 1
57 GTGCTGGTGC Potassium channel subfamily K, member 6 / angiopoietin like 4 11 0
58 GTTAACGTCC Ribosomal protein L44 21 3
59 CCAGGGGAGA Interferon, alpha-inducible protein 27 31 4
60 TGGCCCCACC Pyruvate kinase, muscle 10 1
61 GGAAGCTAAG Osteoblast specific factor 2 (fascilin I-like) * 10 1
62 TAGTTGATGG Galectin 1 * 10 1
63 CTCCATTGCC Sialoadhesin /CD169* 7 0
64 CCCTGTTCAG Tie 1* 13 2
  1. * Low frequency of appearance in public SAGE libraries