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Table 1 Primer sequences (sense (s) and anti-sense (as)), melting temperatures (Tm), annealing temperature and expected product size in nucleotides (nt) for each of the seven selected marker genes.

From: Optimisation of the RT-PCR detection of immunomagnetically enriched carcinoma cells

Name

Sequence 5' – 3'

Tm

Annealing

Size

MUC1 s

ACCAAGACTGATGCCAGTAGCACT

65°C

  

MUC1 as

ACCGTTACCTGCAGAAACCTTCT

63°C

68°C

115 nt

ESX s

CTCGGAGCTCCCACTCCTCAGA

68°C

  

ESX as

GCTCTTCTTGCCCTCGAGACAGT

67°C

68°C

188 nt

CEA s

GGTTGGGGTTGCTCTGATATAGCAGC

70°C

  

CEA as

GCTGTTGCAAATGCTTTAAGGAAGAAGC

67°C

66°C

97 nt

EPHB4 s

CCCCAGGGAAGAAGGAGAGCTG

68°C

  

EPHB4 as

GCCCACGAGCTGGATGACTGTG

68°C

68°C

250 nt

EGFR s

TGTGAGGTGGTCCTTGGGAATTTGG

67°C

  

EGFR as

TGCTGACTATGTCCCGCCACTGGA

69°C

66°C

339 nt

EpCAM s

GGACCTGACAGTAAATGGGGAAC

65°C

  

EpCAM as

CTCTTCTTTCTGGAAATAACCAGCAC

65°C

68°C

186 nt

MGB1 s

CGGATGAAACTCTGAGCAATGTTGAG

66°C

  

MGB1 as

CTGCAGTTCTGTGAGCCAAAGGTC

67°C

68°C

110 nt

  1. Primer sequences (sense (s) and anti-sense (as)), melting temperatures (Tm), annealing temperature and expected product size in nucleotides (nt) for each of the seven selected marker genes. The TM (Salt adjusted) was calculated using the web-based Oligonucleotide Properties calculators http://www.basic.nwu.edu/biotools/oligocalc.html