Table 2 Comparison of genotype frequencies between breast cancer patients and controls (Set 1)

rs1049982

Recessive

0.93 (0.63-1.37)

T/T

79 (12.8%)

54 (13.4%)

0.72

1309.4

C/C-C/T

537(87.2%)

350 (86.6%)

rs475043

Recessive

1.27 (0.88-1.85)

G/G

75 (11.5%)

62 (13.3%)

0.21

1454.3

A/A-A/G

577 (88.5%)

404 (86.7%)

rs511895

Recessive

1.25 (0.86-1.81)

A/A

74 (11.4%)

60(12.9%)

0.25

1451.9

G/G-A/G

576(88.6%)

404 (87.1%)

rs7104301

Recessive

0.78 (0.51-1.19)

G/G

69 (10.6%)

40 (8.6%)

0.24

1454.3

A/A-A/G

584 (89.4%)

425 (91.4%)

rs769214

Recessive

0.86 (0.59-1.26)

G/G

80 (12.5%)

57 (12.4%)

0.45

1436

A/A-A/G

560 (87.5%)

404 (87.6%)

rs5964125

Dominant

1.07 (0.81-1.40)

A/G-G/G

182 (27.8%)

130 (27.8%)

0.65

1462.2

A/A

472 (72.2%)

337 (72.2%)

rs5964151

Dominan

1.10 (0.83-1.44)

G/T-G/G

181 (27.7%)

133 (28.5%)

0.51

1459.3

T/T

472 (72.3%)

333 (71.5%)

rs1014852

Recessive

1.22 (0.29-5.19)

T/T

4 (0.6%)

4 (0.9%)

0.79

1462.3

A/A-A/T

650 (99.4%)

463 (99.1%)

rs11415624

Recessive

0.90 (0.60-1.34)

A/A

73 (11.2%)

47 (10.1%)

0.59

1458.5

D/D-D/A

579 (88.8%)

419 (89.9%)

rs3736729

Recessive

0.74 (0.54-1.01)

C/C

147 (22.4%)

79 (16.9%)

0.058**

1458.7

A/A-A/C

508 (77.6%)

387 (83.1%)

rs4140528

Dominant

0.98 (0.77-1.25)

C/T-T/T

297 (45.6%)

206 (44.4%)

0.87

1455.4

C/C

354 (54.4%)

258 (55.6%)

rs7515191

Recessive

1.21 (0.86-1.70)

A/A

93 (14.2%)

77 (16.5%)

0.22

1461.7

G/G-A/G

562 (85.8%)

390 (83.5%)

rs7549683

Recessive

1.21 (0.86-1.70)

T/T

93 (14.3%)

76 (16.3%)

0.27

1454.8

G/G-G/T

556 (85.7%)

391 (83.7%)

rs4812042

Dominant

0.96 (0.75-1.23)

A/G-G/G

357 (55.6%)

258 (55.4%)

0.73

1449.3

A/A

285 (44.4%)

208 (44.6%)

rs7121

Recessive

0.97 (0.71-1.32)

C/C

130 (20.3%)

93 (19.9%)

0.84

1442.5

T/T-C/T

509 (79.7%)

374 (80.1%)

rs919196

Dominant

1.12 (0.87-1.45)

C/T-C/C

224 (34.3%)

169 (36.2%)

0.37

1460.2

T/T

429 (65.7%)

298 (63.8%)

rs406113

Dominant

1.26 (0.98-1.62)

A/C-C/C

314 (51%)

272 (57.6%)

0.066**

1408.9

A/A

302 (49%)

200 (42.4%)

rs974334

Recessive

2.01 (1.07 -3.80)

G/G

18 (2.8%)

25 (5.4%)

0.03**

1452.9

C/C-C/G

633 (97.2%)

441 (94.6%)

rs1002149

Dominant

0.95 (0.72-1.26)

G/T-T/T

173 (28.2%)

127 (27.4%)

0.73

1417.4

G/G

441 (71.8%)

337 (72.6%)

rs2551715

Recessive

0.88 (0.62-1.26)

A/A

94 (14.4%)

60 (12.9%)

0.5

1455.5

G/G-A/G

557 (85.6%)

405 (87.1%)

rs2911678

Recessive

0.96 (0.48-1.95)

T/T

20 (3.1%)

14 (3%)

0.92

1443.5

A/A-A/T

629 (96.9%)

445 (97%)

rs8190996

Recessive

1.22 (0.89-1.66)

T/T

126 (19.4%)

96 (20.6%)

0.21

1456.6

C/C-C/T

524 (80.6%)

371 (79.4%)

rs13041792

Dominant

1.13 (0.88-1.45)

A/G-A/A

240 (36.9%)

181 (39.1%)

0.35

1450.9

G/G

411 (63.1%)

282 (60.9%)

rs2273684

Recessive

1.21 (0.88-1.65)

G/G

115 (17.6%)

92 (19.8%)

0.24

1456

T/T-G/T

539 (82.4%)

373 (80.2%)

rs1805754

Dominant

1.31 (1.02- 1.68)

A/C-C/C

257 (40%)

215 (46.1%)

0.034**

1444.2

A/A

386 (60%)

251 (53.9%)

rs933462

Dominant

1.06 (0.82-1.38)

G/T-G/G

431 (66.6%)

317 (68%)

0.64

1452.2

T/T

216 (33.4%)

149 (32%)

rs11013291

Recessive

1.09 (0.79-1.51)

C/C

106 (16.3%)

82 (17.6%)

0.6

1458.5

T/T-C/T

546 (83.7%)

385 (82.4%)

rs2274064

Recessive

0.88 (0.65-1.20)

C/C

136 (21.7%)

91 (20%)

0.42

1413.4

T/T-C/T

491 (78.3%)

364 (80%)

rs2274065

Dominant

1.21 (0.85-1.72)

A/C-C/C

84 (12.9%)

69 (14.8%)

0.3

1458.9

A/A

568 (87.1%)

398 (85.2%)

rs2296164

Recessive

0.84 (0.62-1.14)

T/T

143 (22.6%)

91 (19.7%)

0.25

1434.1

C/C-C/T

491 (77.4%)

370 (80.3%)

rs2072712

Dominant

1.16 (0.84-1.59)

C/T-T/T

108 (16.5%)

88 (18.9%)

0.37

1461.4

C/C

547 (83.5%)

378 (81.1%)

rs570234

Dominant

1.03 (0.79-1.34)

A/C-C/C

388 (63.2%)

273 (63%)

0.81

1355.7

A/A

226 (36.8%)

160 (37%)

rs576881

Dominant

1.13 (0.88-1.46)

A/G-G/G

390 (60.6%)

293 (62.9%)

0.33

1448.1

A/A

254 (39.4%)

173 (37.1%)

rs816296

Dominant

1.20(0.93-1.55)

A/C-A/A

211 (32.5%)

172 (36.8%)

0.17

1455.6

C/C

438 (67.5%)

295 (63.2%)

rs2779248

Recessive

0.88 (0.60-1.29)

C/C

75 (11.7%)

55 (11.8%)

0.52

1444.5

T/T-C/T

569 (88.3%)

410 (88.2%)

rs3729508

Dominant

0.90 (0.69-1.18)

A/G-A/A

443 (70.4%)

316 (69%)

0.46

1421.5

G/G

186 (29.6%)

142 (31%)

rs4827881

Dominant

1.00 (0.78-1.29)

A/C-A/A

246 (37.6%)

177 (37.9%)

0.98

1462.8

C/C

408 (62.4%)

290 (62.1%)

rs5921682

Dominant

1.12 (0.85-1.47)

A/G-G/G

459 (70.4%)

339 (72.6%)

0.42

1459.8

A/A

193 (29.6%)

128 (27.4%)

rs490934

Recessive

3.34 (0.57-19.43)

C/C

2 (0.3%)

4 (0.9%)

0.16

1459.6

G/G-C/G

651 (99.7%)

463(99.1%)

rs1052133

Recessive

1.76 (1.00-3.10)

G/G

34 (5.1%)

28 (8.1%)

0.051**

1124

C/C-C/G

631 (94.9%)

319 (91.9%)

rs2842980

Recessive

1.40 (0.82-2.37)

T/T

31 (4.9%)

31 (6.7%)

0.22

1439.2

A/A-A/T

606 (95.1%)

435 (93.3%)

rs2855116

Dominant

0.89 (0.68-1.16)

G/T-G/G

440 (69.3%)

313 (67%)

0.39

1444.1

T/T

195 (30.7%)

154 (33%)

rs8031

Dominant

0.85 (0.65-1.10)

A/T-A/A

458 (70.6%)

313 (67.2%)

0.22

1454.3

T/T

191 (29.4%)

153 (32.8%)

rs2284659

Recessive

1.30 (0.92-1.84)

T/T

83 (12.9%)

80 (17.2%)

0.14**

1445.6

G/G-G/T

560 (87.1%)

386 (82.8%)

rs2301241

Dominant

0.80 (0.60-1.07)

C/T-C/C

460 (74.4%)

348 (71.2%)

0.14**

1350.5

T/T

158 (25.6%)

141 (28.8%)

rs4135168

Dominant

1.17 (0.90-1.52)

A/G-G/G

238 (39.9%)

183 (43.4%)

0.23

1328

A/A

359 (60.1%)

239 (56.6%)

rs4135179

Dominant

1.27 (0.97-1.66)

A/G-G/G

178 (28%)

151 (32.8%)

0.085**

1431

A/A

458 (72%)

310 (67.2%)

rs4135225

Recessive

0.66 (0.45- 0.96)

C/C

104 (16.2%)

48 (10.5%)

0.029**

1431.1

T/T-C/T

536 (83.8%)

410 (89.5%)

rs2281082

Recessive

1.52 (0.73-3.17)

T/T

15 (2.3%)

16 (3.5%)

0.26

1443.5

G/G-G/T

627 (97.7%)

447 (96.5%)

rs5756208

Recessive

1.54 (0.77-3.11)

T/T

17 (2.7%)

17 (3.7%)

0.23

1438.5

A/A-A/T

618 (97.3%)

445 (96.3%)

rs10861201

Recessive

0.69 (0.41-1.17)

A/A

49 (7.6%)

23 (5.1%)

0.16

1411.8

C/C-A/C

592 (92.4%)

425 (94.9%)

rs4077561

Recessive

1.20 (0.86-1.68)

T/T

92 (14.6%)

80 (17.4%)

0.28

1425

C/T-T/T

540 (85.4%)

380 (82.6%)

rs4964287

Dominant

1.09 (0.85-1.40)

C/T-T/T

356 (54.4%)

266 (57%)

0.48

1461.9

C/C

298 (45.6%)

201 (43%)

rs4964778

Dominant

1.17 (0.90-1.51)

C/G-G/G

216 (33.1%)

171 (36.7%)

0.24

1457.3

C/C

436 (66.9%)

295 (63.3%)

rs4964779

Dominant

1.16 (0.80-1.68)

C/T-C/C

76 (11.8%)

62 (13.3%)

0.43

1451.5

T/T

569 (88.2%)

405 (86.7%)

rs5018287

Recessive

1.12 (0.82-1.53)

A/A

118 (18%)

91 (19.6%)

0.47

1453.9

G/G-A/G

536 (82%)

372 (80.4%)

rs737866

Dominant

1.16 (0.90-1.49)

A/G-G/G

298 (49%)

234 (53.4%)

0.25

1364.1

A/A

310 (51%)

204 (46.6%)

rs10175754

Dominant

0.92 (0.69-1.22)

C/T-C/C

177 (27.8%)

118 (26%)

0.55

1418.6

T/T

460 (72.2%)

335 (74%)

rs10187719

Recessive

0.80 (0.51-1.26)

T/T

59 (9.9%)

34 (7.9%)

0.34

1353.8

C/C-C/T

539 (90.1%)

398 (92.1%)

rs1346644

Recessive

1.48 (0.71-3.09)

G/G

16 (2.5%)

15 (3.2%)

0.29

1458

C/C-C/G

637 (97.5%)

450 (96.8%)

rs1429374

Dominant

1.15 (0.89-1.47)

A/G-A/A

356 (54.9%)

274 (59%)

0.28

1450.4

G/G

292 (45.1%)

190 (41%)

rs1884725

Recessive

0.71 (0.42-1.22)

A/A

42 (6.5%)

23 (5%)

0.21

1444.1

G/G-A/G

604 (93.5%)

439 (95%)

rs206801

Recessive

3.42 (0.33-35.82)

T/T

1 (0.2%)

3 (0.6%)

0.27

1462

C/C-C/T

654 (99.8%)

464 (99.4%)

rs206812

Recessive

0.96 (0.72-1.28)

A/A

159 (24.4%)

111 (23.8%)

0.78

1461.8

G/G-A/G

494 (75.6%)

356 (76.2%)

rs2073316

Recessive

1.14 (0.84-1.56)

A/A

118 (18.6%)

95 (20.8%)

0.4

1423.7

G/G-A/G

517 (81.4%)

361 (79.2%)

rs207454

Recessive

4.98 (1.28- 19.34)

C/C

3 (0.5%)

9 (1.9%)

0.012**

1450.3

A/A-A/C

646 (99.5%)

457 (98.1%)

rs761926

Dominant

0.85 (0.66-1.08)

C/G-G/G

334 (51.1%)

214 (45.8%)

0.18

1459.4

C/C

319 (48.9%)

253 (54.2%)