Skip to main content

Table 2 Alignment and coverage statistics by sample

From: Identification of somatic and germline mutations using whole exome sequencing of congenital acute lymphoblastic leukemia

 

Total Reads

Total Mapped

% Covered at 20x

Average Coverage

% PCR duplicates

Sample 1 tumor

304,589,893

271,320,952

92%

210x

7.6

Sample 1 germline

295,105,503

263,056,333

90%

199x

8.9

Sample 1 mother

195,514,828

193,745,082

86%

147x

32.5

Sample 1 father

203,906,150

202,199,642

85%

145x

36.2

Sample 2 tumor

204,158,706

142,291,992

84%

141x

7.7

Sample 2 germline

243,212,434

220,803,923

82%

107x

14.5

Sample 3 tumor

185,947,244

127,115,774

83%

128x

7.6

Sample 3 germline

252,335,878

204,463,822

83%

111x

16.0

Sample 4 tumor

214,824,644

157,010,833

85%

149x

7.8

Sample 4 germline

239,034,182

215,730,577

83%

108x

15.7