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Table 2 Top 10 cell cycle genes up- and down-regulated in MCF10DCIS cells after Cl-amidine treatment

From: Identification of PADI2 as a potential breast cancer biomarker and therapeutic target

Symbol

Description

Fold change

p-value

Genes upregulated

   

CDKN1A

Cyclin-dependent kinase inhibitor 1A (p21, Cip1)

17.68

1.06E-03

GADD45A

Growth arrest and DNA-damage-inducible, alpha

13.53

3.57E-03

ATM

Ataxia telangiectasia mutated

9.61

6.91E-04

DIRAS3

DIRAS family, GTP-binding RAS-like 3

8.87

2.41E-04

HERC5

Hect domain and RLD 5

8.20

2.31E-03

RAD17

RAD17 homolog (S. pombe)

7.50

2.20E-05

CUL2

Cullin 2

6.57

7.37E-04

CCNE1

Cyclin E1

6.18

5.51E-04

ATR

Ataxia telangiectasia and Rad3 related

5.83

1.77E-04

CCNT2

Cyclin T2

5.68

1.15E-04

Genes downregulated

   

MCM5

Minichromosome maintenance complex component 5

−8.45

3.23E-02

CDK1

Cyclin-dependent kinase 1

−8.14

2.88E-03

CDC20

Cell division cycle 20 homolog (S. cerevisiae)

−7.90

2.00E-06

GTSE1

G-2 and S-phase expressed 1

−6.62

4.84E-03

MCM2

Minichromosome maintenance complex component 2

−6.40

7.55E-04

MKI67

Antigen identified by monoclonal antibody Ki-67

−5.11

7.60E-05

CCNF

Cyclin F

−5.07

1.10E-02

BIRC5

Baculoviral IAP repeat containing 5 (Survivin)

−4.49

1.10E-02

BCL2

B-cell CLL/lymphoma 2

−4.14

1.70E-05

CCND2

Cyclin D2

−3.74

3.95E-02

  1. MCF10DCIS cells were treated with 200 μM Cl-amidine after seeding (5 × 104), and total RNA was collected 5d post-seeding. The mRNA for each group was tested on the RT2 Profiler PCR Cell Cycle Array (SABiosciences Corporation, catalog number PAHS-020A). The PCR array was designed to study the profile of 84 human cell cycle related genes. Using a threshold value of 2-fold expression change and a statistical significance of p < 0.05, we found that Cl-amidine affected the expression of a subset of genes, with the top 10 up- and down-regulated genes displayed here.