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Table 1 Primer sequences with corresponding annealing temperatures, efficiencies, and product length in basepairs (bp) used for realtime PCR

From: Human α-defensin (DEFA) gene expression helps to characterise benign and malignant salivary gland tumours

Gene

Primer sequences (sense/antisense)

Efficiency

Annealing temperature (°C)

Product length (bp)

GAPDH

5′;-TGGTATCGTGGAAGGACTCA-3′;

1.93

67

132

5′;-CCAGTAGAGGCAGGGATGAT-3′;

DEFA1/3

5′;-ATGAGGACCCTCGCCATCCTTGCT-3′;

2.17

69

285

5′;-TCAGCAGCAGAATGCCCAGCGTCTTCCC-3′;

DEFA4

5′;-GTCTGCTCTTGCAGATTAGTATTCTG-3′;

1.98

69

105

 

5′;-TTAATCGACACGCGTGCAGCAGTAT-3′;

   
  1. PCR efficiencies for every set of primers were determined with dilution series of primer specific cloned PCR-products at the corresponding annealing temperature. Efficiency stands for the performance to amplify a cDNA template. Efficiency values of 2.0 means an amplification of 100%.