From: Effects on human transcriptome of mutated BRCA1 BRCT domain: A microarray study
Gene Symbol | Gene Name | Primer Sequences |
---|---|---|
Housekeeping genes | Â | Â |
ACTB | actin, beta | F: 5'-AACTGGAACGGTGAAGGTGAC-3' |
 |  | R: 5'-GACTTCCTGTAACAACGCATCTC-3' |
HPRT1 | hypoxanthine phosphoribosyltransferase 1 | F: 5'-ACATCTGGAGTCCTATTGACATCG-3' |
 |  | R: 5'-TTAAACAACAATCCGCCCAAAGG-3' |
GAPDH | glyceraldehyde-3-phosphate dehydrogenase | F: 5'-GTGAAGGTCGGAGTCAACG-3' |
 |  | R: 5'-GGTGAAGACGCCAGTGGACTC-3' |
TBP | TATA box binding protein | F: 5'-GGTGTTGTGAGAAGATGGATGTTG-3' |
 |  | R: 5'-CCAGATAGCAGCACGGTATGAG-3' |
Target genes | Â | Â |
CDKN1A | cyclin-dependent kinase inhibitor 1A (p21, Cip1) | F: 5'-ACTAGGCGGTTGAATGAGAGGTTC-3' |
 |  | R: 5'-CAGGTCTGAGTGTCCAGGAAAGG-3' |
EDN1 | endothelin 1 | F: 5'-CCAACCATCTTCACTGGCTTCC-3' |
 |  | R: 5'-GTCAGACACAAACACTCCCTTAGG-3' |
EEF1E1 | eukaryotic translation elongation factor 1 epsilon 1 | F: 5'-TGCGGGAGGTTCTTGTTCTG-3' |
 |  | R: 5'-CTGTTAGACTTGGACCATTGTTTG-3' |
GPR56 | G protein-coupled receptor 56 | F: 5'-CTACAGCCGAAGAATGTGACTC-3' |
 |  | R: 5'-GCAGAAGCAGGATGTTTGGG-3' |
MRE11A | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | F: 5'-GATGATGAAGTCCGTGAGGCTATG-3' |
 |  | R: 5'-TGTTGGTTGCTGCTGAGATGC-3' |
NFKB1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | F: 5'-CCGTTGGGAATGGTGAGGTC-3' |
 |  | R: 5'-TTGAGAATGAAGGTGGATGATTGC-3' |
OBFC2B | oligonucleotide/oligosaccharide-binding fold containing 2B | F: 5'-GACGATGTTGGCAATCTG-3' |
 |  | R: 5'-TGGCTCACTGAAGTTAGG-3' |
PML | promyelocytic leukemia | F: 5'-CCAAGGCAGTCTCACCAC-3' |
 |  | R: 5'-TTCGGCATCTGAGTCTTCC-3' |
SOD2 | superoxide dismutase 2, mitochondrial | F: 5'-GGTGTCCAAGGCTCAGGTTG-3' |
 |  | R: 5'-GTGCTCCCACACATCAATCCC-3' |