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Table 2 Genotype and allele frequencies of ICOS polymorphisms and their associations with breast cancer risk

From: ICOS gene polymorphisms are associated with sporadic breast cancer: a case-control study

SNP

Study cohort

Validation cohort

 

Genotype

and allele

Cases

n = 609(%)

Controls

n = 665(%)

OR (95% CI)5

P value

Cases

n = 619(%)

Controls

n = 682(%)

OR (95% CI)5

P value

rs118890311

CC

248(40.92)

281(43.03)

reference

     
 

CT

286(47.19)

293(44.87)

1.104(0.872,1.398)

0.411

    
 

TT

72(11.88)

79(12.10)

1.025(0.713,1.472)

0.896

    
 

C

782(64.52)

855(65.47)

reference

     
 

T

430(35.48)

451(34.53)

1.039(0.882,1.224)

0.647

    

rs10932029

TT

523(85.88)

599(90.08)

reference

 

522(84.33)

614(90.03)

reference

 
 

CT

82(13.46)

64(9.62)

1.475(1.042,2.088)

0.029

95(15.35)

66(9.68)

1.693(1.201,2.350)

0.002

 

CC

4(0.66)

2(0.30)

2.348(0.427,12.904)

0.326

2(0.32)

2(0.29)

1.171(0.164,8.353)

0.875

 

T

1128(92.61)

1262(94.89)

reference

 

1139(92.00)

1294(94.87)

reference

 
 

C

90(7.39)

68(5.11)

1.490(1.076,2.063)

0.016

99(8.00)

66(5.13)

1.595(1.162,2.189)

0.004

rs46753742

CC

136(22.48)

165(25.82)

reference

     
 

CT

320(52.89)

325(50.86)

1.193(0.907,1.571)

0.207

    
 

TT

149(24.63)

149(23.32)

1.216(0.882,1.677)

0.233

    
 

C

592(48.93)

655(51.25)

reference

     
 

T

618(51.07)

623(48.75)

1.099(0.939,1.286)

0.241

    

rs101830873

AA

438 (72.16)

487(74.01)

reference

     
 

AC

154(25.37)

155(23.57)

0.909(0.702,1.177)

0.469

    
 

CC

15(2.47)

16(2.43)

0.951(0.454,1.993)

0.894

    
 

A

1030(84.84)

1129(85.79)

reference

     
 

C

184(15.16)

187(14.21)

0.998(0.826,1.158)

0.795

    

rs109320374

CC

568(93.42)

618(94.93)

reference

     
 

CT

40(6.58)

33(5.07)

1.326(0.824,2.133)

0.245

    
 

TT

0

0

--

--

    
 

C

1176(96.71)

1269(97.47)

reference

     
 

T

40(3.29)

33(2.53)

1.315(0.823,2.100)

0.252

    
  1. 1 cases n = 606, missing n = 3; controls n = 653, missing n = 12.
  2. 2 cases n = 605, missing n = 4; controls n = 639, missing n = 26.
  3. 3 cases n = 607, missing n = 2; controls n = 658, missing n = 7.
  4. 4cases n = 608, missing n = 1; controls n = 651, missing n = 14.
  5. 5ORs were adjusted for age
  6. Abbreviations: OR = odds ratio; CI = confidence interval