Figure 2

Copy number alterations and LOH events in ccRCC primary cultures and parental tissues, as calculated by CNAG v3.0 software. On each chromosomal arm (p, short arm; q, long arm), amplifications (↑) and deletions (↓) and LOH events are reported for all samples. Color labels distinguish CN alterations (CNAs) detected by CNAG and signed in the color-coded "HMM-CN state" track (red for amplifications and dark green for deletions), and CNAs resulting below threshold to be visualized in the HMM-CN track (light green for deletions). Only LOH events reaching significant likelihood to be signed by CNAG in the HMM-LOH track are reported.