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Table 2 Species in the clade of Primate sharing human DDR PVs

From: Pathogenic variants in human DNA damage repair genes mostly arose in recent human history

Species (MYAa)

Gene

Shared human DDR PVs

cDNA

Protein

Orangutan (15.2)

PMS2

c.803 + 1G > A

p.(Tyr268*)

Gibbon (19.5)

TP53

c.537 T > A

p.(His179Gln)

 

TP53

c.489C > A

p.(Tyr163*)

 

DNA2

c.593G > A

p.(Arg198His)

Rhesus (28.8)

ATM

c.3994-159A > G

p.(=)

 

TP53

c.887A > G

p.(His296Arg)

Crab-eating macaque (28.8)

ATM

c.3994-159A > G

p.(=)

 

FANCA

c.14G > A

p.(Trp5*)

 

TP53

c.887A > G

p.(His296Arg)

Baboon (28.8)

TP53

c.887A > G

p.(His296Arg)

 

BRCA1

c.3122C > G

p.(Ser1041*)

Green monkey (28.8)

ATM

c.3994-159A > G

p.(=)

 

BRCA2

c.9501G > A

p.(=)

 

FANCA

c.2982-192A > G

p.(=)

 

TP53

c.887A > G

p.(His296Arg)

Marmoset (38)

ATM

c.3994-159A > G

p.(=)

 

ATM

c.2341C > T

p.(Gln781*)

 

BRCA2

c.1642C > T

p.(Gln548*)

 

MLH1

c.208-3C > T

p.(=)

 

TP53

c.887A > G

p.(His296Arg)

 

BRCA1

c.850C > T

p.(Gln284*)

 

POLK

c.1284G > A

p.(=)

Squirrel monkey (38)

ATM

c.2341C > T

p.(Gln781*)

 

BRCA2

c.1642C > T

p.(Gln548*)

 

BRCA2

c.4689G > A

p.(Trp1563*)

 

FANCA

c.14G > A

p.(Trp5*)

 

MLH1

c.208-3C > T

p.(=)

 

TP53

c.887A > G

p.(His296Arg)

 

POLK

c.1284G > A

p.(=)

Bushbaby (74)

ATM

c.3382C > T

p.(Gln1128*)

 

BRCA2

c.2651C > A

p.(Ser884*)

 

BRCA2

c.2978G > A

p.(Trp993*)

 

BRCA2

c.4689G > A

p.(Trp1563*)

 

BRCA2

c.5263G > T

p.(Glu1755*)

 

BRCA2

c.5791C > T

p.(Gln1931*)

 

FANCA

c.3765 + 2C > T

p.(=)

 

FANCA

c.2504 + 134A > G

p.(=)

 

FANCA

c.2021C > A

p.(Ser674*)

 

FANCA

c.1567-20A > G

p.(=)

 

FANCA

c.683C > G

p.(Ala228Gly)

 

FANCC

c.1490G > A

p.(Trp497*)

 

MLH1

c.208-3C > T

p.(=)

 

PMS2

c.1606C > T

p.(Gln536*)

 

TP53

c.887A > G

p.(His296Arg)

 

FANCG

c.346C > T

p.(Gln116*)

 

POLH

c.2074A > G

p.(Thr692Ala)

 

BRCA1

c.4185 + 4105C > T

p.(=)

 

BRCA1

c.1058G > A

p.(Trp353*)

 

POLK

c.1284G > A

p.(=)

 

POLK

c.2033C > T

p.(Ser678Phe)

 

RNASEH2B

c.58G > C

p.(Val20Leu)

 

PALB2

c.1451 T > A

p.(Leu484*)

 

PALB2

c.1675C > T

p.(Gln559*)

  1. aMYA (million year ago) from human based on TIMETREE5 (timetree.org)
  2. *MYA (million year ago) refers to the time of the species from human based on TIMETREE5 (timetree.org)