Table 1 miRNAs regulated by ATRA in NB cell lines
Study (reference and country) | Cell type | ATRA treatment | miRNAs upregulated | miRNAs downregulated |
|---|---|---|---|---|
Chen and Stallings (2007) [31] United States | SK-N-BE | 5 μmol/L for 5 days | 17; miR-330, miR-187, miR-331, miR-200c, miR-216, miR-150, miR-141, miR-200a, miR-326, miR-186, miR-30b, miR-137, miR-184, miR-129, let-7b, let-7a and miR-181a; most significant: miR-184 | 4; miR-323, miR-302a, miR-181b and miR-92; most significant miR-192 |
Laneve et al. (2007) [20] Italy | SK-N-BE | 10 μmol/L for 10 days | 14; miR-9, miR-124a, miR-125a, miR-125b, let-7a, let-7b, miR-7, miR-22, miR-23a, miR-24, miR-26a, miR-30a-5p, miR-100 and miR-103; most significant: miR-124a | – |
Evangelisti et al. (2009) [21] Italy | SH-SY5Y | 10 μmol/L for 6 days | miR-128 | – |
Le et al. (2009) [32] United States | SH-SY5Y | 10 μmol/L for 5 days | 6; miR-7, miR-124a, miR-125b, miR-199a, miR-199a*, and miR-214; most significant: miR-199a* | – |
Beverigde et al. (2009) [33] Australia | SH-SY5Y | 10 μmol/L for 6 days | 12; miR-10a, miR-128a, miR-331, miR-124a, miR-409-5p, miR-210, miR-149, miR-9, miR-423, miR-483, miR-208 and miR-184; most significant: miR-10a. | 32; miR-301, miR-19a*, miR-520d*, miR-18a*, miR-106a*, miR-218, miR-20a, miR-137, miR-15b, miR-20b*, miR-25*, miR-130a, miR-29b, miR-19b*, miR-34a, let-7a, miR-195, miR-106b*, miR-199a, miR-92*, miR-138, miR-93*, miR-432, miR-519e, miR-101, miR-518f-526a, miR-21, miR-134, miR-98, miR-370, miR-525 and miR-91 (aka miR-17-5p); most significant: miR-301. |
Ragusa et al. (2010) [34] Italy | SK-N-BE | 10 μmol/L for 10 days | 3; miR-152, miR-200b and miR-338; most significant: miR-200b | – |
Meseguer et al. (2010) [35] Spain | SH-SY5Y | 1 μmol/L for 4 days | 26; miR-10a, miR-10b, miR-10b, miR-615-5p, miR-211, miR-212, miR-132, miR-22, miR-766, miR-135a, miR-148b*, miR-877, miR-184, miR-135b, miR-30e, miR-214, miR-92b, mir-99b, miR-628-3p, miR-27b, miR-335, miR-25, miR-30a, miR-610, miR-331, 3p, miR-149; most significant: miR-10a and miR-10b | 16; miR-490-3p, miR-154, miR-26a-2, miR-296-3p, miR-422a, miR-486-3p, miR-378, miR-411, miR-543, miR-801, miR-873, miR-107, miR-744, miR-139-3p, miR-487b and miR-106a; most significant: miR-490-3p |
Das et al. (2010) [36] Ireland | SK-N-BE | 5 μmol/L for 7 days | 17; miR-132, miR-10a, miR-10b, miR-210, miR-192, miR-184, miR-146b, miR-152, miR-126, miR-615, miR-21, miR-203, miR-214, miR-24, miR-196a, miR-191 and let-7e; most significant: miR-132 | 17; miR-409-5p, miR-656, miR-299-5p, miR-485-5p, miR-424, miR-127, miR-323, miR-339, miR-576, miR-432, miR-433, miR-7, miR-30e-5p, miR-485-3p, miR-379, miR-134 and miR-487b; most significant: miR-432 |
Das et al. (2012) [37] Ireland | SK-N-BE and SHSY-5Y | 5 μmol/L for 7 days | miR-340 | – |
Chen et al. (2010) [38] United Kingdom | SH-SY5Y | 10 μmol/L for 48 h | 6; miR-132, miR-16, miR-27a, miR-27b, miR-214, and miR-197; most significant: miR-132. | 6; miR-133a, miR-508-3p, miR-7, miR-1, miR-205, and miR-20; most significant: miR-20b |
Foley et al. (2011) [39] Ireland | SK-N-BE, SHSY-5Y and LAN-5 | 5 μmol/L for 7 days | 30; miR-132, miR-10a, miR-10b, miR-210, miR-192, miR-184, miR-146b, miR-152, miR-126, miR-615, miR-21, miR-203, miR-214, miR-24, miR-196a, miR-191, miR-7e, miR-28, miR-95, miR-26b, miR-26a, miR-199a, miR-374, miR-340, miR-125b, miR-125a, miR-7 g, miR-425-5p, miR-190, miR- 361; most significant: miR-132, miR-10a, and miR-10b | 23; miR-409-5p, miR-656, miR-299-5p, miR-485-5p, miR-424, miR-127, miR-323, miR-339, miR-576, miR-432, miR-433, miR-7, miR-30e-5p, miR-485-3p, miR-379, miR-134, miR-487b, miR-382, miR-486, miR-565, miR-149, miR-550 and miR-503; most significant: miR-409-5p |
Das and Bhattacharyya (2014) [22] (India) | SH-SY5Y | 10 μmol/L for 7 days | 31; miR-9, miR-9*, miR-15b, miR-16, miR-34a, miR-100, miR-124, miR-125b, miR-126, miR-132, miR-134, miR-137, let-7a, miR-432, miR-15a, miR-21, miR-23a, miR-27b, miR-29c, miR-103, miR-125a, miR-128a, miR-140, miR-141, miR-185, miR-326, miR-1320, let-b, let-7e, miR-127 and miR-10a; most significant: miR-432 | 33; miR-17, miR-19a, miR-138, miR-145, miR-146a, miR-148a, miR-150, miR-154, miR-190 miR-194, miR-200a, miR-205, miR-221, miR-299, miR-323, miR-335, miR-30e, miR-133a, miR-133b, miR-142-5p, miR-144, miR-152, miR-185, miR-189, miR-191, miR-193, miR-200c, miR-213, miR-219, miR-296, miR-302a, miR-331 and miR-342; most significant: miR-17 |