From: Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes
Pathway ID | Description | KEGG Category/Description* | # genes | # up-regulated genes | # down-regulated genes | p-value |
---|---|---|---|---|---|---|
up-regulated | Â | Â | Â | Â | Â | Â |
230 | Purine metabolism | Nucleotide Metabolism | 119 | 11 | 23 | 4.37E-05 |
440 | Aminophosphonate metabolism | Metabolism of Other Amino Acids | 12 | 0 | 6 | 0.000153 |
626 | Nitrobenzene degradation | Biodegradation of Xenobiotics | 11 | 0 | 5 | 0.00098 |
363 | Bisphenol A degradation | Biodegradation of Xenobiotics | 16 | 0 | 6 | 0.00101 |
350 | Tyrosine metabolism | Amino Acid Metabolism | 44 | 6 | 10 | 0.00196 |
450 | Selenoamino acid metabolism | Metabolism of Other Amino Acids | 20 | 0 | 6 | 0.00370 |
52 | Galactose metabolism | Carbohydrate Metabolism | 27 | 2 | 7 | 0.00429 |
4540 | Gap junction | Cell Communication | 85 | 4 | 14 | 0.00670 |
340 | Histidine metabolism | Amino Acid Metabolism | 31 | 1 | 7 | 0.00964 |
4110 | Cell cycle | Growth and Death | 98 | 2 | 15 | 0.01009 |
Down-regulated | Â | Â | Â | Â | Â | Â |
190 | Oxidative phosphorylation | Energy Metabolism | 128 | 46 | 8 | 2.95E-27 |
193 | ATP synthesis | Energy Metabolism | 42 | 14 | 4 | 2.68E-08 |
720 | Reductive carboxylate cycle | Energy Metabolism | 10 | 6 | 0 | 5.25E-06 |
20 | Citrate cycle (TCA cycle) | Carbohydrate Metabolism | 26 | 9 | 2 | 6.56E-06 |
620 | Pyruvate metabolism | Carbohydrate Metabolism | 35 | 8 | 5 | 0.00057 |
240 | Pyrimidine metabolism | Nucleotide Metabolism | 72 | 12 | 12 | 0.00057 |
660 | C5-branched dibasic acid metabolism | Carbohydrate Metabolism | 2 | 2 | 0 | 0.00319 |
480 | Glutathione metabolism | Metabolism of Other Amino Acids/Neutralization of ROS* | 37 | 7 | 1 | 0.00400 |
280 | Valine, leucine and isoleucine degradation | Amino Acid Metabolism | 39 | 7 | 6 | 0.00543 |