Table 5 Gene ontology for differentially expressed genes found in Caco-2 cells
Gene Category | Down (genes) | Up (genes) | Combined list Affy probes | EASE score |
|---|---|---|---|---|
cell motility | 8 | 1 | 10 | 0.0459 |
cytoplasm organization and biogenesis | 8 | 1 | 10 | 0.0459 |
muscle development | 7 | 1 | 9 | 0.0872 |
morphogenesis | 18 | 7 | 33 | 0.0879 |
development | 22 | 10 | 43 | 0.107 |
cell adhesion | 11 | 3 | 18 | 0.112 |
cell surface receptor linked signal transduction | 11 | 3 | 18 | 0.112 |
organelle organization and biogenesis | 6 | 1 | 8 | 0.158 |
cytoskeleton organization and biogenesis | 6 | 1 | 8 | 0.158 |
cell organization and biogenesis | 11 | 4 | 19 | 0.159 |
organogenesis | 16 | 7 | 31 | 0.179 |
response to stress | 8 | 3 | 14 | 0.282 |
macromolecule biosynthesis | 9 | 4 | 17 | 0.331 |
cell-cell signaling | 6 | 2 | 10 | 0.346 |
signal transduction | 19 | 5 | 30 | 0.0118 |
immune response | 9 | 1 | 11 | 0.0233 |
protein metabolism | 15 | 4 | 23 | 0.0235 |
cellular process | 58 | 34 | 126 | 0.0316 |
defense response | 10 | 2 | 14 | 0.0467 |
transcription\, DNA-dependent | 17 | 10 | 37 | 0.358 |
transcription | 17 | 10 | 37 | 0.358 |
response to biotic stimulus | 10 | 5 | 20 | 0.374 |
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism | 24 | 16 | 56 | 0.434 |
regulation of transcription\, DNA-dependent | 16 | 10 | 36 | 0.442 |
regulation of transcription | 16 | 10 | 36 | 0.442 |
cell cycle | 9 | 5 | 19 | 0.486 |
nucleotide metabolism | 3 | 2 | 7 | 0.835 |
nuclear division | 3 | 3 | 9 | 0.927 |
mitosis | 3 | 3 | 9 | 0.927 |
mitotic cell cycle | 5 | 3 | 11 | 0.691 |
cytokinesis | 2 | 2 | 6 | 0.952 |