From: Identification of astrocytoma associated genes including cell surface markers
Tag Sequence | Tumora | Inductionb | Gene | Gene Ontology |
---|---|---|---|---|
 |  |  | Anaplastic astrocytomas (Grade III) |  |
AAGCCGAAGA | 10 | 40 | GFAP glial fibrillary acidic protein | Major intermediate filament protein of mature astrocytes |
CTGGGGAGTG | 8.1 | 22 | VAPB VAMP associated protein B and C | Type IV membrane protein in plasma and intracellular vesicle membranes |
GCAACAGCAA | 80.9 | 19 | SEC61G Sec61 gamma subunit | Endoplasmatic reticulum membrane protein, translocation |
TTAATCTGAG | 6.9 | 18 | ARHGEF6 | Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6, intra-cellular |
ATCTTGTTAC | 11 | 15 | FN1 fibronectin 1 | Extra-cellular matrix, cell adhesion, cell migration |
GGAACAAACA | 11.9 | 14 | CD24 | Plasma membrane, small cell lung carcinoma cluster 4 antigen |
AGGGAGGGGC | 32.9 | 14 | GPX3 glutathione peroxidase 3 | Extra-cellular, response to oxidative stress, glutathione metabolism |
GTATGGGCCC | 26.8 | 13 | CHI3L1 chitinase 3-like 1 | Cartilage glycoprotein |
ACGAGGGGTG | 71.4 | 12 | BCAN, chondroitin sulfate proteoglycan | Cell adhesion |
CACTTGAAAA | 6.9 | 11 | CALU calumenin | Endoplasmatic reticulum, calcium ion binding |
GATAACTACA | 6.7 | 11 | IGFBP7 | Extra-cellular, insulin-like growth factor binding protein 7 |
TCCTGTAAAG | 6.8 | 11 | CAV1 caveolin 1, 22 kDa | Plasma membrane, caveolae protein, integrin-mediated celladhesion, vesicular trafficking |
GTCTTAAAGT | 41.8 | 10 | SOD2 | Superoxide dismutase, mitochondrial, erythropoietin-mediated neuro protection through NF-kB |
 |  |  | Glioblastomas (grade IV) |  |
GTATGGGCCC | 144.2 | 72 | CHI3L1 chitinase 3-like 1 | Cartilage glycoprotein |
GACCACCTTT | 17.3 | 69 | MFAP2 microfibrillar-associated protein 2 | Major antigen of elastin-associated microfibrils |
ACCAAAAACC | 115.8 | 49 | COL1A1 collagen, type I, alpha 1 | Extra-cellular matrix |
AGTGGTGGCT | 14.8 | 39 | FMOD fibromodulin | Extra-cellular matrix, TGF beta receptor complex assembly |
CTGGGGAGTG | 13.2 | 35 | VAPB VAMP associated protein B and C | Type IV membrane protein in plasma and intracellular vesicle membranes |
ACATTCTTTT | 38.2 | 34 | GPNMB glycoprotein nmb | Transmembrane glycoprotein |
ATCTTGTTAC | 21.1 | 28 | FN1 fibronectin 1 | Extra-cellular matrix, cell adhesion, cell migration |
GCAACAGCAA | 97.9 | 23 | SEC61G Sec61 gamma subunit | Endoplasmatic reticulum membrane protein, translocation |
TCACCAAAAA | 19.3 | 19 | STAB1 stabilin 1 | Cell adhesion, calcium ion binding |
CACTTGAAAA | 11.6 | 19 | CALU calumenin | Endoplasmatic reticulum, calcium ion binding |
TTTTCAAATA | 15.4 | 15 | T1A-2 lung type-I | Type I integral membrane glycoprotein |
GTCTTTCTTG | 24.4 | 14 | RAB13 | Cell adhesion, member RAS oncogene family |
GGAAATGTCA | 12.6 | 13 | MMP2 matrix metalloproteinase | Extra-cellular matrix, calcium ion binding |
GTACTAGTGT | 23.8 | 12 | CCL2 chemokine (C-C motif) ligand 2 | Extra-cellular matrix, cell adhesion, signal transduction |
AAGCTGTATA | 16.7 | 12 | TNC tenascin C (hexabrachion) | Extra-cellular matrix, cell adhesion |
GTGCTAAGCG | 10.8 | 11 | COL6A2 collagen, type VI, alpha 2 | Extra-cellular matrix |
CATATCATTA | 151.6 | 11 | IGFBP7 | Extra-cellular, insulin-like growth factor binding protein 7 |
AACACAGCCT | 24.9 | 11 | C4A complement component 4A | Extra-cellular matrix, complement pathway |