From: Identification of astrocytoma associated genes including cell surface markers
Tag sequence | Symbol | Gene/Ontology | Mean tumora | Mean normalb | % SAGEc | % RT-PCRd |
---|---|---|---|---|---|---|
 |  | Low grade astrocytomas (grade II) |  |  |  |  |
TGGGATTCCC | CHI3L2 | Chitinase 3-like 2 / cartilage biogenesis, extra-cellular | 10.8 | 0 | 25 | 57 |
ATCTGCTCGG | NMB | Neuromedin B / signal transduction, neuropeptide | 9.1 | 0.1 | 38 | 57 |
GTCAGAACTT | Â | cDNA FLJ22528 / unknown | 5.8 | 0.3 | 38 | 43 |
GTACGGAGAT | VCAM1 | Vascular cell adhesion molecule 1/ cell adhesion | 4.4 | 0.2 | 50 | 29 |
 |  | Anaplastic astrocytomas (grade III) |  |  |  |  |
TGGGATTCCC | CHI3L2 | Chitinase 3-like 2 / cartilage biogenesis, extra-cellular | 12.3 | 0 | 30 | 63 |
GTGCGGAGGA | SAA1 | Serum amyloid A1/ inflammatory response, lipid metabolism, extra-cellular | 11.4 | 0 | 20 | 50 |
TTTGCACTTT | SMOC1 | Secreted modular calcium-binding 1/ calcium ion binding | 6.0 | 0 | 50 | 50 |
CCATTGTGGA | ADORA3 | Adenosine A3 receptor / signal transduction, G-protein coupled receptor | 4.1 | 0.1 | 60 | 50 |
ATCTGCTCGG | NMB | Neuromedin B/ signal transduction, neuropeptide | 9.1 | 0.1 | 40 | 81 |
CGCGGCGGCG | CRF | C1q-related factor / function unknown | 7.8 | 0.1 | 70 | 56 |
CCCAGTAAGA | CSRP2 | Cysteine and glycine-rich protein 2 / cell differentiation/growth, LIM domain protein | 9.4 | 0.2 | 80 | 44 |
GTACGGAGAT | VCAM1 | Vascular cell adhesion molecule 1/ cell adhesion | 3.0 | 0.2 | 20 | 69 |
 |  | Glioblastomas (grade IV) |  |  |  |  |
ACTGTCGCCA | AQP1 | aquaporin 1 / water transport, ion channel | 5.8 | 0 | 22 | 53 |
ATGTAGAGTG | TYMS | thymidylate synthetase / pyrimidine metabolism | 7.1 | 0 | 67 | 71 |
CTCAGCAATG | TOP2A | topoisomerase (DNA) II alpha (170 kD) / DNA metabolism, isomerase | 4.2 | 0 | 44 | 88 |
GTCAACAGTA | ABCC3 | ATP-binding cassette, subfamily C, member 3/ multidrug resistance, transport protein | 12.3 | 0 | 89 | 94 |
GTGCGGAGGA | SAA1 | serum amyloid A1/ inflammatory response, lipid metabolism, extra-cellular | 14.3 | 0 | 44 | 53 |
TGGGATTCCC | CHI3L2 | chitinase 3-like 2 / cartilage biogenesis, extra-cellular | 31.3 | 0 | 67 | 100 |
ATCTGCTCGG | NMB | Neuromedin B / signal transduction, neuropeptide | 4.6 | 1 | 44 | 53 |
GTTTATGGAT | MGP | Matrix Gla protein /cartilage condensation, ossification, extra-cellular | 7 | 2 | 56 | 35 |