From: DNA methylation analysis reveals distinct methylation signatures in pediatric germ cell tumors
CpG Locus | Effect sizea | q-value | Δ beta YST1b | Δ beta YST2b |
---|---|---|---|---|
HLA . F _ E402 _ F | 3.69 | <2.2E-16 | 0.86 | 0.81 |
WT1 _ E32 _ F | 3.41 | <2.2E-16 | 0.86 | 0.83 |
RASSF1 _ E116 _ F | 3.16 | <2.2E-16 | 0.87 | 0.79 |
CYP1B1 _ E83 _ R | 3.13 | <2.2E-16 | 0.74 | 0.54 |
CCNA1_E7_F | 3.13 | <2.2E-16 | 0.67 | 0.78 |
SLC22A3_E122_R | 3.12 | <2.2E-16 | 0.82 | 0.74 |
SCGB3A1_E55_R | 3.05 | <2.2E-16 | 0.80 | 0.77 |
HOXA9_E252_R | 2.99 | <2.2E-16 | 0.78 | 0.76 |
TFAP2C_E260_F | 2.98 | <2.2E-16 | 0.81 | 0.71 |
FGF3_P171_R | 2.96 | <2.2E-16 | 0.78 | 0.75 |
PDGFRB_P343_F | 2.95 | <2.2E-16 | 0.67 | 0.55 |
NPY_P295_F | 2.92 | <2.2E-16 | 0.81 | 0.75 |
ASCL2_P360_F | 2.90 | <2.2E-16 | 0.82 | 0.70 |
LRRC32_P865_R | 2.90 | <2.2E-16 | 0.81 | 0.44 |
CDK10_E74_F | 2.88 | <2.2E-16 | 0.83 | 0.65 |
HFE_E273_R | 2.87 | <2.2E-16 | 0.80 | 0.75 |
SOX1_P294_F | 2.86 | <2.2E-16 | 0.79 | 0.70 |
TAL1_P594_F | 2.83 | <2.2E-16 | 0.78 | 0.73 |
RASGRF1_E16_F | 2.80 | <2.2E-16 | 0.64 | 0.73 |
WT1_P853_F | 2.79 | <2.2E-16 | 0.78 | 0.73 |
HLF_E192_F | 2.77 | <2.2E-16 | 0.80 | 0.75 |
GUCY2D_E419_R | 2.75 | <2.2E-16 | 0.83 | 0.06 |
HS3ST2_E145_R | 2.75 | <2.2E-16 | 0.84 | 0.79 |