Table 2 Biological pathways displaying up-regulation (versus normal mucosa) in SPLs, LPLs, and CRCs

1) KEGG BASE EXCISION REPAIR

48

0.042

-

-

2) KEGG HOMOLOGOUS RECOMBINATION

34

0.043

-

-

3) REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX

35

0.047

-

-

4) REACTOME HOMOLOGOUS RECOMBINATION REPAIR

22

-

0.048

-

5) BIOCARTA CELLCYCLE PATHWAY

32

-

-

0.025

6) BIOCARTA MONOCYTE PATHWAY

20

-

-

0.035

7) BIOCARTA P27 PATHWAY

14

-

-

0.025

8) BIOCARTA RB PATHWAY

20

-

-

0.047

9) BIOCARTA SET PATHWAY

15

-

-

0.034

10) BIOCARTA SKP2E2F PATHWAY

12

-

-

0.014

11) KEGG RNA POLYMERASE

27

-

-

0.04

12) REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE

40

-

-

0.027

13) REACTOME CYTOSOLIC TRNA AMINOACYLATION

26

-

-

0.031

14) REACTOME G1 PHASE

17

-

-

0.03

15) REACTOME GLUCOSE TRANSPORT

55

-

-

0.041

16) REACTOME GLYCOLYSIS

27

-

-

0.039

17) REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY

39

-

-

0.049

18) REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY

9

-

-

0.034

19) REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC

25

-

-

0.027

20) REACTOME PROSTANOID HORMONES

15

-

-

0.046

21) REACTOME RNA POLYMERASE III CHAIN ELONGATION

12

-

-

0.033

22) REACTOME RNA POLYMERASE III TRANSCRIPTION INITIATION FROM TYPE 2 PROMOTER

21

-

-

0.047

23) REACTOME TAT MEDIATED HIV1 ELONGATION ARREST AND RECOVERY

31

-

-

0.049

24) REACTOME TRNA AMINOACYLATION

34

-

-

0.048

25) REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS

40

-

-

0.043

26) REACTOME VPR MEDIATED NUCLEAR IMPORT OF PICS

48

-

-

0.031

27) SA REG CASCADE OF CYCLIN EXPR

18

-

-

0.01

28) BIOCARTA ARF PATHWAY

24

0.033

0.037

-

29) KEGG NUCLEOTIDE EXCISION REPAIR

48

0.031

0.043

-

30) KEGG ONE CARBON POOL BY FOLATE

19

0.004

0.032

-

31) REACTOME DUAL INCISION REACTION IN GG NER

18

0.032

0.025

-

32) REACTOME G2 M TRANSITION

80

0.038

0.035

-

33) REACTOME MITOCHONDRIAL TRNA AMINOACYLATION

11

0.032

0.04

-

34) REACTOME PURINE METABOLISM

42

0.037

0.03

-

35) REACTOME RNA POLYMERASE I CHAIN ELONGATION

29

0.021

0.026

-

36) REACTOME RNA POLYMERASE I PROMOTER ESCAPE

21

0.027

0.014

-

37) REACTOME RNA POLYMERASE I TRANSCRIPTION INITIATION

25

0.013

0.009

-

38) REACTOME RNA POLYMERASE I TRANSCRIPTION TERMINATION

22

0.027

0.013

-

39) REACTOME SNRNP ASSEMBLY

60

0.031

0.029

-

40) REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE

11

0.015

-

0.029

41) REACTOME RNA POLYMERASE III TRANSCRIPTION INITIATION

29

0.041

-

0.047

42) REACTOME NUCLEAR IMPORT OF REV PROTEIN

39

-

0.049

0.043

43) REACTOME REV MEDIATED NUCLEAR EXPORT OF HIV1 RNA

41

-

0.043

0.039

44) BIOCARTA PTC1 PATHWAY

13

0.022

0.018

0.028

45) BIOCARTA RANMS PATHWAY

8

0.013

0.024

0.022

46) REACTOME CYCLIN A1 ASSOCIATED EVENTS DURING G2 M TRANSITION

19

0.038

0.034

0.026

47) REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC

18

0.044

0.039

0.011

48) REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS

13

0

0.004

0.008

49) REACTOME REGULATION OF GLUCOKINASE BY GLUCOKINASE REGULATORY PROTEIN

42

0.044

0.031

0.044