Region | Cell line | CN statusa | BP Intervals (hg 18) in array-CGH | Distance between cell linesb | Genesc | CFSs |
---|---|---|---|---|---|---|
9p21.3 a | KYSE180 | Neutral/Del | 21958099-21968346 | 115.1 kb | C9orf53 § , CDKN2A * , CDKN2B † , CDKN2B-AS1 † | FRA9C |
KYSE450 | Neutral/Del | 21853263-21968346 | MTAP § , C9orf53 § , CDKN2A * | |||
KYSE510 | Loss/Del | 21958099-21968346 | C9orf53 § , CDKN2A * , CDKN2B † , CDKN2B-AS1 † | |||
YES2 | Neutral/Del | 21853263-21957548 | MTAP § , C9orf53 † , CDKN2A † | |||
15q25.3 | KYSE450 | Neutral/Gain | 86361096-86429254 | 154.2 kb | LINC00052 § , NTRK3 * , MRPL46 † , MRPS11 † | |
KYSE510 | Neutral/Gain | 86275066-86429254 | LINC00052 § , NTRK3 * , MRPL46 † , MRPS11 † | |||
11q13.4 | KYSE30 | Amp/Loss | 70964483-71305189 | 340.1 kb | KRTAP5-11 § , FAM86C1, DEFB108B, RNF121 † | FRA11H |
KYSE510 | Amp/Neutral | 70964483-71305189 | KRTAP5-11 § , FAM86C1, DEFB108B, RNF121 † | |||
3q28 | KYSE180 | Gain/Gain | 191171376-191222891 | 517.0 kb | TP63 § , LEPREL1 * , CLDN1 † | |
KYSE510 | Neutral/Gain | 191610761-191688399 | CLDN1 § , CLDN16, TMEM207 † , IL1RAP † | |||
10q26.3 | KYSE30 | Neutral/Gain | 133045086-133476780 | 801.8 kb | TCERG1L § , PPP2R2D † | |
YES2 | Neutral/Gain | 133795639-133846905 | BNIP3 § , JAKMIP3 * , DPYSL4 † | |||
11q13.3 | KYSE30 | Amp/Amp | 69339391-69569221 | 1.05 Mb | FGF3 § , ANO1 † , FADD † | FRA11H |
KYSE180 | Amp/Amp | 70182767-70386856 | CTTN § , SHANK2 * , DHCR7 † | |||
4p13 | KYSE150 | Amp/Loss | 41832777-42109513 | 1.15 Mb | SLC30A9 § , BEND4, SHISA3 † , ATP8A1 † | |
KYSE510 | Neutral/Loss | 40955943-41226036 | UCHL1 § , LIMCH1 * , PHOX2B † | |||
11p13 | KYSE510 | Neutral/Gain | 33107818-33136537 | 1.2 Mb | TCP11L1 § , PIGCP1 § , CSTF3 * , HIPK3 † | |
YES2 | Neutral/Gain | 34278741-34307224 | NAT10 § , ABTB2 * , CAT † | |||
8q24.21 | KYSE450 | Amp/Neutral | 129216964-129574570 | 1.23 Mb | FAM84B § , POU5F1B, MYC † , PVT1 † | |
KYSE510 | Amp/Loss | 129972316-130159085 | FAM84B § , POU5F1B, MYC † , PVT1 † | |||
YES2 | Amp/Neutral | 130159144-130451718 | far from genes, PVT1 § , GSDMC † | |||
2q35 | KYSE30 | Loss/Neutral | 217432472-218386863 | 1.37 Mb | DIRC3 § , TNS1, CXCR2P1 † | |
KYSE150 | Loss/Gain | 218517852-218801703 | TNS1 § , CXCR2P1, CXCR2, CXCR1, HMGB1P9, ARPC2 † | |||
1q31.1 | KYSE150 | Gain/Loss | 186080345-186315797 | 1.40 Mb | PLA2G4A §, FAM5C † | FRA1K |
KYSE450 | Gain/Neutral | 184912220-185051701 | PTGS2 § , PLA2G4A † | |||
21q21.1 | KYSE30 | Gain/Neutral | 17060792-17145790 | 1.48 Mb | USP25 § , C21orf34 § , CXADR † | |
YES2 | Gain/Neutral | 18435266-18540695 | CHODL-AS1 § , CHODL † , TMPRSS15 † | |||
9p21.3 b | KYSE180 | Del/Neutral | 21999029-22136626 | 1.45 Mb | CDKN2A * , CDKN2B, CDKN2B-AS1, DMRTA1 † | FRA9C |
KYSE450 | Del/Neutral | 21980581-21993651 | CDKN2A * , CDKN2B, CDKN2B-AS1 * , DMRTA1 † | |||
KYSE510 | Del/Loss | 22992377-23425976 | DMRTA1 * , ELAVL2 † | |||
YES2 | Del/Neutral | 21999029-22136626 | CDKN2B, CDKN2B-AS1, DMRTA1 † | |||
18q12.2 | KYSE450 | Gain/Loss | 33583906-33747373 | 1.64 Mb | CELF4 § , LOC647946 † | FRA18A |
KYSE510 | Amp/Loss | 32107441-32200063 | MOCOS § , FHOD3, C18orf10 † | |||
3p14.2 | KYSE150 | Gain/Loss | 58573676-58887412 | 1.69 Mb | FAM107A § , FAM3D, C3orf67, FHIT † | FRA3B |
KYSE450 | Neutral/Del | 59933661-60267262 | FHIT # | |||
3q12.1-q12.2 | KYSE180 | Neutral/Amp | 100190484-100877203 | 1.86 Mb | TFG § , ABI3BP * , IMPG2 † | |
KYSE450 | Neutral/Gain | 102009730-102076392 | DCBLD2 § , COL8A1 † | |||
6p12.3-p12.2 | KYSE150 | Loss/Amp | 51932658-52161439 | 1.9 Mb | PKHD1 § , IL17A † , MCM3 † | |
YES2 | Gain/Gain | 50261630-50627364 | DEFB112 § , TFAP2D † |